Hi,
Although you have set -DDEALII_WITH_MPI=ON it seems from the following
lines in your output :
-- Found LAPACK
-- Use other than Intel MKL implementation of BLAS/LAPACK (consult
CMakeFiles/CMakeError.log for further information).
-- DEAL_II_WITH_LAPACK successfully set up with external dependencies.
--
-- Include /home/christos/dealii-9.2.0/cmake/configure/configure_1_mpi.cmake
*-- DEAL_II_WITH_MPI is set to off. *
that the contrary is occurring. You are missing an underscore in the
original cmake command. It should be *-DDEAL_II_WITH_MPI=ON *in your cmake
command.
Best,
Aaditya
On Tuesday, October 13, 2020 at 11:31:02 AM UTC-4 karliampa...@gmail.com
wrote:
> Dear all,
>
> i try to build dealii with PETSc and METIS using command,
>
> cmake -DDEAL_II_WITH_PETSC=ON -DPETSC_DIR=/home/christos/petsc
> -DPETSC_ARCH=x86_64 -DDEAL_II_WITH_METIS=ON
> -DMETIS_DIR=/home/christos/metis-5.1.0 -DDEALII_WITH_MPI=ON
> -DCMAKE_INSTALL_PREFIX=/usr/local ..
>
> having the following output on the screen
>
>
> -- This is CMake 3.10.2
> --
> -- Include /home/christos/dealii-9.2.0/cmake/setup_external_macros.cmake
> -- Include /home/christos/dealii-9.2.0/cmake/macros/macro_add_flags.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_check_compiler_setup.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_check_cxx_compiler_bug.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_check_mpi_interface.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_clear_cmake_required.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_configure_feature.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_deal_ii_add_definitions.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_deal_ii_add_library.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_deal_ii_add_test.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_deal_ii_find_file.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_deal_ii_find_library.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_deal_ii_find_path.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_deal_ii_find_program.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_deal_ii_initialize_cached_variables.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_deal_ii_insource_setup_target.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_deal_ii_invoke_autopilot.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_deal_ii_package_handle.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_deal_ii_pickup_tests.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_deal_ii_query_git_information.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_deal_ii_setup_target.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_decorate_with_stars.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_enable_if_links.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_enable_if_supported.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_enable_language_optional.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_evaluate_expression.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_expand_instantiations.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_filter_system_libraries.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_find_package.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_find_system_library.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_item_matches.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_purge_feature.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_register_feature.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_remove_duplicates.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_replace_flag.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_reset_cmake_required.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_set_if_empty.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_setup_source_list.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_setup_unity_target.cmake
> -- Include /home/christos/dealii-9.2.0/cmake/macros/macro_strip_flag.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_switch_library_preference.cmake
> -- Include /home/christos/dealii-9.2.0/cmake/macros/macro_to_string.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_to_string_and_add_prefix.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_unset_if_changed.cmake
> -- Include
> /home/christos/dealii-9.2.0/cmake/macros/macro_verbose_include.cmake
> --
> -- Include /home/christos/dealii-9.2.0/cmake/setup_cached_variables.cmake
> -- Prepending ${CUDA_NVCC_FLAGS} to ${DEAL_II_CUDA_FLAGS}
> --
> -- Include /home/christos/dealii-9.2.0/cmake/setup_deal_ii.cmake
> --
> -- Include /home/christos/dealii-9.2.0/cmake/setup_compiler_flags.cmake
> --
> -- Include /home/christos/dealii-9.2.0/cmake/setup_compiler_flags_gnu.cmake
> --
> -- Include /home/christos/dealii-9.2.0/bundled/setup_bundled.cmake
> --
> -- Include
> /home/christos/dealii-9.2.0/cmake/checks/check_01_cpu_features.cmake
> --
> -- Include
> /home/christos/dealii-9.2.0/cmake/checks/check_01_cxx_features.cmake
> -- Using C++ version flag "-std=c++17"
> -- DEAL_II_WITH_CXX14 successfully set up
> -- DEAL_II_WITH_CXX17 successfully set up
> --
> -- Include
> /home/christos/dealii-9.2.0/cmake/checks/check_02_compiler_features.cmake
> --
> -- Include
> /home/christos/dealii-9.2.0/cmake/checks/check_02_system_features.cmake
> --
> -- Include
> /home/christos/dealii-9.2.0/cmake/checks/check_03_compiler_bugs.cmake
> --
> -- Include
> /home/christos/dealii-9.2.0/cmake/configure/configure_1_cuda.cmake
> -- DEAL_II_WITH_CUDA is set to off.
> --
> -- Include
> /home/christos/dealii-9.2.0/cmake/configure/configure_1_lapack.cmake
> -- A library with BLAS API found.
> -- A library with LAPACK API found.
> -- LAPACK_LIBRARIES:
> /usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so;/usr/lib/x86_64-linux-gnu/libblas.so;gfortran;m;gcc_s;gcc;quadmath;m;gcc_s;gcc;c;gcc_s;gcc
> -- LAPACK_LINKER_FLAGS:
> -- LAPACK_INCLUDE_DIRS:
> -- LAPACK_USER_INCLUDE_DIRS:
> -- Found LAPACK
> -- Use other than Intel MKL implementation of BLAS/LAPACK (consult
> CMakeFiles/CMakeError.log for further information).
> -- DEAL_II_WITH_LAPACK successfully set up with external dependencies.
> --
> -- Include
> /home/christos/dealii-9.2.0/cmake/configure/configure_1_mpi.cmake
> -- DEAL_II_WITH_MPI is set to off.
> --
> -- Include
> /home/christos/dealii-9.2.0/cmake/configure/configure_1_threads.cmake
> -- TBB_LIBRARY not found! Call:
> -- FIND_LIBRARY(TBB_LIBRARY NAMES tbb HINTS PATH_SUFFIXES lib lib64
> lib)
> -- TBB_DEBUG_LIBRARY not found! Call:
> -- FIND_LIBRARY(TBB_DEBUG_LIBRARY NAMES tbb_debug HINTS PATH_SUFFIXES
> lib lib64 lib)
> -- TBB_INCLUDE_DIR not found! Call:
> -- FIND_PATH(TBB_INCLUDE_DIR tbb/tbb_stddef.h HINTS PATH_SUFFIXES
> include include/tbb tbb)
> -- TBB_LIBRARIES: *** Required variable "TBB_LIBRARY" set to NOTFOUND ***
> -- TBB_INCLUDE_DIRS: *** Required variable "TBB_INCLUDE_DIR" set to
> NOTFOUND ***
> -- TBB_USER_INCLUDE_DIRS: *** Required variable "TBB_INCLUDE_DIR" set to
> NOTFOUND ***
> -- Could NOT find TBB
> -- The externally provided TBB library is older than version 4.2.0, which
> cannot be used with deal.II.
> -- DEAL_II_WITH_THREADS has unmet external dependencies.
> -- DEAL_II_WITH_THREADS successfully set up with bundled packages.
> --
> -- Include
> /home/christos/dealii-9.2.0/cmake/configure/configure_1_zlib.cmake
> -- ZLIB_VERSION: 1.2.11
> -- ZLIB_LIBRARIES: /usr/lib/x86_64-linux-gnu/libz.so
> -- ZLIB_INCLUDE_DIRS: /usr/include
> -- Found ZLIB
> -- DEAL_II_WITH_ZLIB successfully set up with external dependencies.
> --
> -- Include
> /home/christos/dealii-9.2.0/cmake/configure/configure_2_boost.cmake
> -- Boost version: 1.65.1
> -- Found the following Boost libraries:
> -- iostreams
> -- serialization
> -- system
> -- thread
> -- regex
> -- chrono
> -- date_time
> -- atomic
> -- BOOST_VERSION: 1.65.1
> -- BOOST_LIBRARIES:
> /usr/lib/x86_64-linux-gnu/libboost_iostreams.so;/usr/lib/x86_64-linux-gnu/libboost_serialization.so;/usr/lib/x86_64-linux-gnu/libboost_system.so;/usr/lib/x86_64-linux-gnu/libboost_thread.so;/usr/lib/x86_64-linux-gnu/libboost_regex.so;/usr/lib/x86_64-linux-gnu/libboost_chrono.so;/usr/lib/x86_64-linux-gnu/libboost_date_time.so;/usr/lib/x86_64-linux-gnu/libboost_atomic.so;/usr/lib/x86_64-linux-gnu/libpthread.so
> -- BOOST_INCLUDE_DIRS: /usr/include
> -- BOOST_USER_INCLUDE_DIRS: /usr/include
> -- Found BOOST
> -- DEAL_II_WITH_BOOST successfully set up with external dependencies.
> --
> -- Include
> /home/christos/dealii-9.2.0/cmake/configure/configure_2_ginkgo.cmake
> -- DEAL_II_WITH_GINKGO is set to off.
> --
> -- Include
> /home/christos/dealii-9.2.0/cmake/configure/configure_2_metis.cmake
> -- Found METIS_LIBRARY
> -- Found METIS_INCLUDE_DIR
> -- METIS_VERSION: 5.1.0
> -- METIS_LIBRARIES: /home/christos/metis-5.1.0/lib/libmetis.a
> -- METIS_INCLUDE_DIRS: /home/christos/metis-5.1.0/include
> -- METIS_USER_INCLUDE_DIRS: /home/christos/metis-5.1.0/include
> -- Found METIS
> -- DEAL_II_WITH_METIS successfully set up with external dependencies.
> --
> -- Include
> /home/christos/dealii-9.2.0/cmake/configure/configure_2_trilinos.cmake
> -- DEAL_II_WITH_TRILINOS is set to off.
> --
> -- Include
> /home/christos/dealii-9.2.0/cmake/configure/configure_2_umfpack.cmake
> -- Found UMFPACK_INCLUDE_DIR
> -- Found AMD_INCLUDE_DIR
> -- Found SuiteSparse_config_INCLUDE_DIR
> -- Found UMFPACK_LIBRARY
> -- Found AMD_LIBRARY
> -- Found CHOLMOD_LIBRARY
> -- Found COLAMD_LIBRARY
> -- Found CCOLAMD_LIBRARY
> -- Found CAMD_LIBRARY
> -- Found SuiteSparse_config_LIBRARY
> -- UMFPACK_VERSION: 5.7.6
> -- UMFPACK_LIBRARIES:
> /usr/lib/x86_64-linux-gnu/libumfpack.so;/usr/lib/x86_64-linux-gnu/libcholmod.so;/usr/lib/x86_64-linux-gnu/libccolamd.so;/usr/lib/x86_64-linux-gnu/libcolamd.so;/usr/lib/x86_64-linux-gnu/libcamd.so;/usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so;/usr/lib/x86_64-linux-gnu/libamd.so;/home/christos/metis-5.1.0/lib/libmetis.a;/usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so;gfortran;quadmath;m;c;gcc_s;gcc;rt
> -- UMFPACK_INCLUDE_DIRS:
> /usr/include/suitesparse;/usr/include/suitesparse;/usr/include/suitesparse
> -- UMFPACK_USER_INCLUDE_DIRS:
> /usr/include/suitesparse;/usr/include/suitesparse;/usr/include/suitesparse
> -- UMFPACK_LINKER_FLAGS:
> -- Found UMFPACK
> -- DEAL_II_WITH_UMFPACK successfully set up with external dependencies.
> --
> -- Include
> /home/christos/dealii-9.2.0/cmake/configure/configure_3_petsc.cmake
> -- Found PETSC_LIBRARY
> -- Found PETSC_INCLUDE_DIR_ARCH
> -- Found PETSC_INCLUDE_DIR_COMMON
> -- Found PETSC_PETSCVARIABLES
> -- Found PETSC_LIBRARY_HYPRE
> -- Found PETSC_LIBRARY_lapack
> -- Found PETSC_LIBRARY_blas
> -- Performing Test PETSC_LIBRARY_m
> -- Performing Test PETSC_LIBRARY_m - Success
> -- Performing Test PETSC_LIBRARY_dl
> -- Performing Test PETSC_LIBRARY_dl - Success
> -- Found PETSC_LIBRARY_mpi_usempif08
> -- Found PETSC_LIBRARY_mpi_usempi_ignore_tkr
> -- Found PETSC_LIBRARY_mpi_mpifh
> -- Found PETSC_LIBRARY_mpi
> -- Performing Test PETSC_LIBRARY_gfortran
> -- Performing Test PETSC_LIBRARY_gfortran - Success
> -- Performing Test PETSC_LIBRARY_quadmath
> -- Performing Test PETSC_LIBRARY_quadmath - Success
> -- Performing Test PETSC_LIBRARY_pthread
> -- Performing Test PETSC_LIBRARY_pthread - Success
> -- PETSC_VERSION: 3.14.0.0
> -- PETSC_LIBRARIES:
> /home/christos/petsc/x86_64/lib/libpetsc.so;/home/christos/petsc/x86_64/lib/libHYPRE.so;/usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so;m;dl;/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_usempif08.so;/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_usempi_ignore_tkr.so;/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_mpifh.so;/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so;gfortran;m;gfortran;m;quadmath;pthread;quadmath;dl
> -- PETSC_INCLUDE_DIRS:
> /home/christos/petsc/include;/home/christos/petsc/x86_64/include;/home/christos/petsc/include;/home/christos/petsc/x86_64/include
> -- PETSC_USER_INCLUDE_DIRS:
> /home/christos/petsc/include;/home/christos/petsc/x86_64/include;/home/christos/petsc/include
> ;/home/christos/petsc/x86_64/include
> -- Found PETSC
> -- Could not find a sufficient PETSc installation: PETSc has to be
> configured with the same MPI configuration as deal.II.
> -- DEAL_II_WITH_PETSC has unmet external dependencies.
> -- Configuring incomplete, errors occurred!
> See also "/home/christos/dealii-9.2.0/build/CMakeFiles/CMakeOutput.log".
> See also "/home/christos/dealii-9.2.0/build/CMakeFiles/CMakeError.log".
>
--
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