Hi Pushkar! It appears the PETSc has been found during the configuration of deal.II with cmake, but you can not find the header files of the PETSc libraries during compilation.
Did you follow all instructions on how to interface deal.II to PETSc on this particular guide <https://www.dealii.org/9.0.0/external-libs/petsc.html>? Marc On Thursday, November 26, 2020 at 5:24:58 AM UTC-7 pushkar...@gmail.com wrote: > Dear deal.II community, > > I am installing deal.II 9.0.0 as I wish to run PRIMS-PF on it wherein > during the process I ran into certain issues as : > In file included from > /home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_parallel_vector.h:28, > from > /home/pushkar/dealii-9.0.0/source/dofs/dof_accessor_get.cc:21: > /home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_vector_base.h:32:12: > fatal error: petscvec.h: No such file or directory > 32 | # include <petscvec.h> > | ^~~~~~~~~~~~ > compilation terminated. > make[2]: *** [source/dofs/CMakeFiles/obj_dofs_debug.dir/build.make:160: > source/dofs/CMakeFiles/obj_dofs_debug.dir/dof_accessor_get.cc.o] Error 1 > make[1]: *** [CMakeFiles/Makefile2:3588: > source/dofs/CMakeFiles/obj_dofs_debug.dir/all] Error 2 > make[1]: *** Waiting for unfinished jobs.... > [ 48%] Building CXX object > source/base/CMakeFiles/obj_base_debug.dir/multithread_info.cc.o > In file included from > /home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_parallel_vector.h:28, > from > /home/pushkar/dealii-9.0.0/source/algorithms/operator.cc:30: > /home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_vector_base.h:32:12: > fatal error: petscvec.h: No such file or directory > 32 | # include <petscvec.h> > | ^~~~~~~~~~~~ > compilation terminated. > make[2]: *** > [source/algorithms/CMakeFiles/obj_algorithms_debug.dir/build.make:82: > source/algorithms/CMakeFiles/obj_algorithms_debug.dir/operator.cc.o] Error 1 > make[1]: *** [CMakeFiles/Makefile2:4209: > source/algorithms/CMakeFiles/obj_algorithms_debug.dir/all] Error 2 > [ 48%] Building CXX object > source/base/CMakeFiles/obj_base_debug.dir/named_selection.cc.o > In file included from > /home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_parallel_vector.h:28, > from > /home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_parallel_block_vector.h:24, > from > /home/pushkar/dealii-9.0.0/source/multigrid/mg_base.cc:21: > /home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_vector_base.h:32:12: > fatal error: petscvec.h: No such file or directory > 32 | # include <petscvec.h> > | ^~~~~~~~~~~~ > compilation terminated. > make[2]: *** > [source/multigrid/CMakeFiles/obj_multigrid_debug.dir/build.make:82: > source/multigrid/CMakeFiles/obj_multigrid_debug.dir/mg_base.cc.o] Error 1 > make[1]: *** [CMakeFiles/Makefile2:4047: > source/multigrid/CMakeFiles/obj_multigrid_debug.dir/all] Error 2 > [ 48%] Building CXX object > source/distributed/CMakeFiles/obj_distributed_debug.dir/solution_transfer.cc.o > /home/pushkar/dealii-9.0.0/source/base/mpi.cc:38:12: fatal error: > petscsys.h: No such file or directory > 38 | # include <petscsys.h> > | ^~~~~~~~~~~~ > compilation terminated. > make[2]: *** [source/base/CMakeFiles/obj_base_debug.dir/build.make:368: > source/base/CMakeFiles/obj_base_debug.dir/mpi.cc.o] Error 1 > make[2]: *** Waiting for unfinished jobs.... > [ 48%] Building CXX object > source/distributed/CMakeFiles/obj_distributed_debug.dir/tria.cc.o > In file included from > /home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_parallel_vector.h:28, > from > /home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_parallel_block_vector.h:24, > from > /home/pushkar/dealii-9.0.0/source/lac/block_matrix_array.cc:23: > /home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_vector_base.h:32:12: > fatal error: petscvec.h: No such file or directory > 32 | # include <petscvec.h> > | ^~~~~~~~~~~~ > compilation terminated. > make[2]: *** [source/lac/CMakeFiles/obj_lac_debug.dir/build.make:82: > source/lac/CMakeFiles/obj_lac_debug.dir/block_matrix_array.cc.o] Error 1 > make[1]: *** [CMakeFiles/Makefile2:3615: > source/lac/CMakeFiles/obj_lac_debug.dir/all] Error 2 > [ 48%] Building CXX object > source/distributed/CMakeFiles/obj_distributed_debug.dir/tria_base.cc.o > In file included from > /home/pushkar/dealii-9.0.0/include/deal.II/hp/fe_values.h:24, > from > /home/pushkar/dealii-9.0.0/include/deal.II/numerics/data_out_dof_data.h:30, > from > /home/pushkar/dealii-9.0.0/include/deal.II/numerics/data_out.h:22, > from > /home/pushkar/dealii-9.0.0/source/numerics/data_out.cc:17: > /home/pushkar/dealii-9.0.0/include/deal.II/fe/fe_values.h:48:12: fatal > error: petsc.h: No such file or directory > 48 | # include <petsc.h> > | ^~~~~~~~~ > compilation terminated. > make[2]: *** > [source/numerics/CMakeFiles/obj_numerics_debug.dir/build.make:82: > source/numerics/CMakeFiles/obj_numerics_debug.dir/data_out.cc.o] Error 1 > make[1]: *** [CMakeFiles/Makefile2:3399: > source/numerics/CMakeFiles/obj_numerics_debug.dir/all] Error 2 > [ 48%] Building CXX object > source/distributed/CMakeFiles/obj_distributed_debug.dir/shared_tria.cc.o > In file included from > /home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_parallel_vector.h:28, > from > /home/pushkar/dealii-9.0.0/source/distributed/solution_transfer.cc:25: > /home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_vector_base.h:32:12: > fatal error: petscvec.h: No such file or directory > 32 | # include <petscvec.h> > | ^~~~~~~~~~~~ > compilation terminated. > make[2]: *** > [source/distributed/CMakeFiles/obj_distributed_debug.dir/build.make:95: > source/distributed/CMakeFiles/obj_distributed_debug.dir/solution_transfer.cc.o] > > Error 1 > make[2]: *** Waiting for unfinished jobs.... > [ 50%] Building CXX object > source/matrix_free/CMakeFiles/obj_matrix_free_debug.dir/mapping_info.cc.o > In file included from /home/pushkar/dealii-9.0.0/source/fe/fe_abf.cc:28: > /home/pushkar/dealii-9.0.0/include/deal.II/fe/fe_values.h:48:12: fatal > error: petsc.h: No such file or directory > 48 | # include <petsc.h> > | ^~~~~~~~~ > compilation terminated. > make[2]: *** [source/fe/CMakeFiles/obj_fe_debug.dir/build.make:108: > source/fe/CMakeFiles/obj_fe_debug.dir/fe_abf.cc.o] Error 1 > make[1]: *** [CMakeFiles/Makefile2:3480: > source/fe/CMakeFiles/obj_fe_debug.dir/all] Error 2 > [ 50%] Building CXX object > source/matrix_free/CMakeFiles/obj_matrix_free_debug.dir/matrix_free.cc.o > In file included from > /home/pushkar/dealii-9.0.0/include/deal.II/matrix_free/mapping_info.templates.h:24, > from > /home/pushkar/dealii-9.0.0/source/matrix_free/mapping_info.cc:17: > /home/pushkar/dealii-9.0.0/include/deal.II/fe/fe_values.h:48:12: fatal > error: petsc.h: No such file or directory > 48 | # include <petsc.h> > | ^~~~~~~~~ > compilation terminated. > make[2]: *** > [source/matrix_free/CMakeFiles/obj_matrix_free_debug.dir/build.make:95: > source/matrix_free/CMakeFiles/obj_matrix_free_debug.dir/mapping_info.cc.o] > Error 1 > make[2]: *** Waiting for unfinished jobs.... > [ 50%] Building CXX object > source/grid/CMakeFiles/obj_grid_debug.dir/grid_generator.cc.o > [ 50%] Building CXX object > source/grid/CMakeFiles/obj_grid_debug.dir/grid_in.cc.o > make[1]: *** [CMakeFiles/Makefile2:3696: > source/base/CMakeFiles/obj_base_debug.dir/all] Error 2 > [ 50%] Building CXX object > source/grid/CMakeFiles/obj_grid_debug.dir/grid_out.cc.o > In file included from > /home/pushkar/dealii-9.0.0/include/deal.II/hp/fe_values.h:24, > from > /home/pushkar/dealii-9.0.0/include/deal.II/numerics/data_out_dof_data.h:30, > from > /home/pushkar/dealii-9.0.0/include/deal.II/numerics/data_out.h:22, > from > /home/pushkar/dealii-9.0.0/source/grid/grid_out.cc:27: > /home/pushkar/dealii-9.0.0/include/deal.II/fe/fe_values.h:48:12: fatal > error: petsc.h: No such file or directory > 48 | # include <petsc.h> > | ^~~~~~~~~ > compilation terminated. > make[2]: *** [source/grid/CMakeFiles/obj_grid_debug.dir/build.make:121: > source/grid/CMakeFiles/obj_grid_debug.dir/grid_out.cc.o] Error 1 > make[2]: *** Waiting for unfinished jobs.... > [ 50%] Building CXX object > source/hp/CMakeFiles/obj_hp_debug.dir/dof_level.cc.o > [ 50%] Building CXX object > source/hp/CMakeFiles/obj_hp_debug.dir/fe_collection.cc.o > [ 50%] Built target obj_gmsh_debug > [ 50%] Building CXX object > source/hp/CMakeFiles/obj_hp_debug.dir/fe_values.cc.o > [ 51%] Building CXX object > source/hp/CMakeFiles/obj_hp_debug.dir/mapping_collection.cc.o > [ 51%] Building CXX object > source/hp/CMakeFiles/obj_hp_debug.dir/dof_handler.cc.o > In file included from > /home/pushkar/dealii-9.0.0/include/deal.II/hp/fe_values.h:24, > from /home/pushkar/dealii-9.0.0/source/hp/fe_values.cc:16: > /home/pushkar/dealii-9.0.0/include/deal.II/fe/fe_values.h:48:12: fatal > error: petsc.h: No such file or directory > 48 | # include <petsc.h> > | ^~~~~~~~~ > compilation terminated. > The above out isnt the complete output but only the eror part in the > output and I eventually ended with make error . Moreover,I have compiled > deal.II with Trilinos ,Petsc ,p4est,cuda and mpi flags "on". Any header in > this regard is appreciated . > > Regards > Pushkar > -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to dealii+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/dealii/2e2fb11a-c1b9-4ef6-9158-9373f134a40cn%40googlegroups.com.
