In your geo file, you can check orientation of boundary normals by adding

Geometry.Normals = 100; // adjust 100 if needed

Then check that all normals are pointing outward. If some surface has opposite 
normal, then flip sign

for example, if

Line Loop(53) = {17, 18, -1, -16};
Ruled Surface(54) = {53};

this surface has wrong normal, define it as

Ruled Surface(54) = {-53};

I think fixing this orientation should fix your issue.

best
praveen

> On 09-Mar-2021, at 11:03 PM, krishan...@gmail.com <krishanu.se...@gmail.com> 
> wrote:
> 
> 
> I am wondering what meshing software produces output files that would work 
> best with deal.ii. I have tried Gmsh, but it seems when this mesh (generated 
> by Gmsh) is imported in deal.ii, it is facing the issue of negative volume 
> fraction of a cell (could be because of the order of nodes written in Gmsh?). 
> Any suggestion about any other meshing software that could be used which 
> would avoid this issue?
> 
> Thanks

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