Dear David, go to the folder dealii-candi/tmp/petsc build and take the file 'candi_configure'
This is a script file, which is called to configure petsc. Best Uwe On Tuesday, 18 January 2022 at 05:50:28 UTC+1 dmon...@umich.edu wrote: > Thank you, Wolfgang. I will send them a message. > > Regarding the following: > > > *Can you extract what the command line was with which the PETSc > configurationscript was called?* > > Do you mean the line in the script candi.sh? > > David > > > On Mon, Jan 17, 2022 at 10:41 PM Wolfgang Bangerth <bang...@colostate.edu> > wrote: > >> >> David, >> I think this is a problem for the PETSc folks to give you feedback with. >> Can >> you extract what the command line was with which the PETSc configuration >> script was called? >> >> Best >> W> >> >> On 1/17/22 10:36 AM, David Montiel Taboada wrote: >> > *** Caution: EXTERNAL Sender *** >> > >> > Hello, >> > >> > I am trying to install deal.II (v. 9.2.0) using candi on Fedora v. 35 >> (a >> > virtual machine). I have edited the candi.cfg file to only install the >> > following packages: hdf5, p4est, petsc and dealii. >> > >> > I installed all the packages suggested for the OS, loaded the openmpi >> module, >> > and set the compiler environment variables >> > >> > However, I am getting the following error: >> > >> > /Unpacking petsc-lite-3.13.1.tar.gz >> > Building petsc 3.13.1 >> > >> =============================================================================== >> > Configuring PETSc to compile on your system >> > >> =============================================================================== >> > TESTING: checkCCompiler from >> > config.setCompilers(config/BuildSystem/config/setCompilers.py:630) >> >> > >> > >> >> ******************************************************************************* >> > CONFIGURATION CRASH (Please send configure.log to >> > petsc...@mcs.anl.gov <mailto:petsc...@mcs.anl.gov>) >> > >> ******************************************************************************* >> > >> > Failure with exit status: 1 >> > Exit message: petsc ./configure failed/ >> > >> > Here is the end of the *configure.log* file: >> > >> > /Executing: mpicc -o /tmp/petsc-a93r8y8f/config.setCompilers/conftest >> >> > /tmp/petsc-a93r8y8f/config.setCompilers/conftest.o >> > Testing executable /tmp/petsc-a93r8y8f/config.setCompilers/conftest to >> see if >> > it can be run >> > Executing: /tmp/petsc-a93r8y8f/config.setCompilers/conftest >> > Running Executable with threads to time it out at 60 >> > Executing: /tmp/petsc-a93r8y8f/config.setCompilers/conftest >> > >> ******************************************************************************* >> > CONFIGURATION CRASH (Please send configure.log to >> > petsc...@mcs.anl.gov <mailto:petsc...@mcs.anl.gov>) >> > >> ******************************************************************************* >> > 'InShell' object has no attribute 'isAlive' File >> > >> "/home/mse596/dealii-candi/tmp/build/petsc-lite-3.13.1/config/configure.py", >> >> > line 440, in petsc_confi >> > gure >> > framework.configure(out = sys.stdout) >> > File >> > >> "/home/mse596/dealii-candi/tmp/build/petsc-lite-3.13.1/config/BuildSystem/config/framework.py", >> >> >> > line 1229, in configure >> > self.processChildren() >> > File >> > >> "/home/mse596/dealii-candi/tmp/build/petsc-lite-3.13.1/config/BuildSystem/config/framework.py", >> >> >> > line 1218, in processChildren >> > self.serialEvaluation(self.childGraph) >> > File >> > >> "/home/mse596/dealii-candi/tmp/build/petsc-lite-3.13.1/config/BuildSystem/config/framework.py", >> >> >> > line 1193, in serialEvaluation >> > child.configure() >> > File >> > >> "/home/mse596/dealii-candi/tmp/build/petsc-lite-3.13.1/config/BuildSystem/config/setCompilers.py", >> >> >> > line 1789, in configure >> > self.executeTest(self.checkCCompiler) >> > File >> > >> "/home/mse596/dealii-candi/tmp/build/petsc-lite-3.13.1/config/BuildSystem/config/base.py", >> >> >> > line 139, in executeTest >> > ret = test(*args,**kargs) >> > File >> > >> "/home/mse596/dealii-candi/tmp/build/petsc-lite-3.13.1/config/BuildSystem/config/setCompilers.py", >> >> >> > line 638, in checkCCompiler >> > self.checkCompiler('C') >> > File >> > >> "/home/mse596/dealii-candi/tmp/build/petsc-lite-3.13.1/config/BuildSystem/config/setCompilers.py", >> >> >> > line 504, in checkCompiler >> > if not self.checkRun(linkLanguage=linkLanguage): >> > File >> > >> "/home/mse596/dealii-candi/tmp/build/petsc-lite-3.13.1/config/BuildSystem/config/base.py", >> >> >> > line 681, in checkRun >> > (output, returnCode) = self.outputRun(includes, body, cleanup, >> > defaultArg, executor,linkLanguage=linkLanguage, timeout = timeout, >> threads = >> > threads >> > ) >> > File >> > >> "/home/mse596/dealii-candi/tmp/build/petsc-lite-3.13.1/config/BuildSystem/config/base.py", >> >> >> > line 662, in outputRun >> > (output, error, status) = Configure.executeShellCommand(command, >> log = >> > self.log, timeout = timeout, threads = threads) >> > File >> > >> "/home/mse596/dealii-candi/tmp/build/petsc-lite-3.13.1/config/BuildSystem/script.py", >> >> >> > line 200, in executeShellCommand >> > return Script.executeShellCommandSeq([command], >> > checkCommand=checkCommand, timeout=timeout, log=log, >> lineLimit=lineLimit, >> > cwd=cwd,logOutputflg = lo >> > gOutputflg, threads = threads) >> > File >> > >> "/home/mse596/dealii-candi/tmp/build/petsc-lite-3.13.1/config/BuildSystem/script.py", >> >> >> > line 249, in executeShellCommandSeq >> > (output, error, status) = runInShell(commandseq, log, cwd) >> > File >> > >> "/home/mse596/dealii-candi/tmp/build/petsc-lite-3.13.1/config/BuildSystem/script.py", >> >> >> > line 239, in runInShell >> > if thread.isAlive(): >> > >> ================================================================================ >> > Finishing configure run at Mon, 17 Jan 2022 12:06:23 -0500 >> > >> ================================================================================/ >> > >> > I hope someone can help. >> > >> > Thank you! >> > >> > David >> > >> > >> > -- >> > The deal.II project is located at http://www.dealii.org/ >> > < >> https://nam10.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.dealii.org%2F&data=04%7C01%7CWolfgang.Bangerth%40colostate.edu%7C1fae70197194469944d108d9d9dfdf21%7Cafb58802ff7a4bb1ab21367ff2ecfc8b%7C0%7C0%7C637780378717011972%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=syZb82jeIB2b2hVHa%2FGnfWTgiGvrsd1JZEHUyUzjvl0%3D&reserved=0 >> > >> > For mailing list/forum options, see >> > https://groups.google.com/d/forum/dealii?hl=en >> > < >> https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgroups.google.com%2Fd%2Fforum%2Fdealii%3Fhl%3Den&data=04%7C01%7CWolfgang.Bangerth%40colostate.edu%7C1fae70197194469944d108d9d9dfdf21%7Cafb58802ff7a4bb1ab21367ff2ecfc8b%7C0%7C0%7C637780378717011972%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=jf4apeH3Vtdx4imTRQVn9lTL4zP63yEJBTZscJbIJGQ%3D&reserved=0 >> > >> > --- >> > You received this message because you are subscribed to the Google >> Groups >> > "deal.II User Group" group. >> > To unsubscribe from this group and stop receiving emails from it, send >> an >> > email to dealii+un...@googlegroups.com >> > <mailto:dealii+un...@googlegroups.com>. >> > To view this discussion on the web visit >> > >> https://groups.google.com/d/msgid/dealii/CAJdNbL9qtrN_BTCOYzFgBrtBoZXm_%2BRM_KobCtwMc4UdjKEX4Q%40mail.gmail.com >> >> > < >> https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgroups.google.com%2Fd%2Fmsgid%2Fdealii%2FCAJdNbL9qtrN_BTCOYzFgBrtBoZXm_%252BRM_KobCtwMc4UdjKEX4Q%2540mail.gmail.com%3Futm_medium%3Demail%26utm_source%3Dfooter&data=04%7C01%7CWolfgang.Bangerth%40colostate.edu%7C1fae70197194469944d108d9d9dfdf21%7Cafb58802ff7a4bb1ab21367ff2ecfc8b%7C0%7C0%7C637780378717011972%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=mKf5fQMpHfm%2BWSUTNdNIHcmUyjrI2qkEDr5WvRA5axM%3D&reserved=0 >> >. >> >> >> -- >> ------------------------------------------------------------------------ >> Wolfgang Bangerth email: bang...@colostate.edu >> www: http://www.math.colostate.edu/~bangerth/ >> >> -- >> The deal.II project is located at http://www.dealii.org/ >> For mailing list/forum options, see >> https://groups.google.com/d/forum/dealii?hl=en >> --- >> You received this message because you are subscribed to the Google Groups >> "deal.II User Group" 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