Dear Sir/Ma'am,
trying to install dealii-9.1.1 version using candi command. i just change
the version in candi.cfg from 9.4.2 to 9.1.1 as suggested.then uses candi
commands to install. But i am getting error.
please help me out.
Thank you.
usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/intracomm.h:101:22:
warning: ‘virtual MPI::Intracomm& MPI::Intracomm::Clone() const’ can be
marked override [-Wsuggest-override]
101 | virtual Intracomm& Clone() const;
| ^~~~~
In file included from /usr/lib/x86_64-linux-gnu/
openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:227,
from /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:2887,
from /home/newton/dealii-candi/tmp/
build/deal.II-v9.1.1/include/deal.II/base/config.h:439,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/include/deal.II/base/tensor.h:19,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/include/deal.II/base/derivative_form.h:19,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/include/deal.II/numerics/vector_tools.templates.h:20,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/source/numerics/vector_tools_boundary.cc:17:
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/topology.h:65:21:
warning: ‘virtual MPI::Cartcomm& MPI::Cartcomm::Clone() const’ can be
marked override [-Wsuggest-override]
65 | virtual Cartcomm& Clone() const;
| ^~~~~
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/topology.h:143:22:
warning: ‘virtual MPI::Graphcomm& MPI::Graphcomm::Clone() const’ can be
marked override [-Wsuggest-override]
143 | virtual Graphcomm& Clone() const;
| ^~~~~
In file included from /usr/lib/x86_64-linux-gnu/
openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:228,
from /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:2887,
from /home/newton/dealii-candi/tmp/
build/deal.II-v9.1.1/include/deal.II/base/config.h:439,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/include/deal.II/base/tensor.h:19,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/include/deal.II/base/derivative_form.h:19,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/include/deal.II/numerics/vector_tools.templates.h:20,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/source/numerics/vector_tools_boundary.cc:17:
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/intercomm.h:75:22:
warning: ‘virtual MPI::Intercomm& MPI::Intercomm::Clone() const’ can be
marked override [-Wsuggest-override]
75 | virtual Intercomm& Clone() const;
| ^~~~~
In file included from /usr/lib/x86_64-linux-gnu/
openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277,
from /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:2887,
from /home/newton/dealii-candi/tmp/
build/deal.II-v9.1.1/include/deal.II/base/config.h:439,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/include/deal.II/base/tensor.h:19,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/include/deal.II/base/derivative_form.h:19,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/include/deal.II/numerics/vector_tools.templates.h:20,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/source/numerics/vector_tools_boundary.cc:17:
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:
In member function ‘virtual void MPI::Op::Init(void (*)(const void*, void*,
int, const MPI::Datatype&), bool)’:
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:25:
warning: cast between incompatible function types from ‘void (*)(void*,
void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*,
ompi_datatype_t**))’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’
[-Wcast-function-type]
121 | (void)MPI_Op_create((MPI_User_function*)
ompi_mpi_cxx_op_intercept,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
~~~~~~~~~~~~~~~~
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:38:
warning: cast between incompatible function types from ‘void (*)(const
void*, void*, int, const MPI::Datatype&)’ to ‘void (*)(void*, void*, int*,
ompi_datatype_t**)’ [-Wcast-function-type]
123 | ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/
detail/sp_thread_sleep.hpp:22,
from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
from /usr/include/boost/smart_ptr/
detail/spinlock_gcc_atomic.hpp:14,
from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
from /usr/include/boost/smart_ptr/
detail/spinlock_pool.hpp:25,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
from /usr/include/boost/archive/
detail/helper_collection.hpp:27,
from /usr/include/boost/archive/
detail/basic_iarchive.hpp:28,
from /usr/include/boost/archive/
detail/common_iarchive.hpp:21,
from /usr/include/boost/archive/
basic_binary_iarchive.hpp:30,
from /usr/include/boost/archive/
binary_iarchive_impl.hpp:21,
from /usr/include/boost/archive/binary_iarchive.hpp:20,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/include/deal.II/base/utilities.h:45,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/include/deal.II/base/tensor.h:26,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/include/deal.II/base/derivative_form.h:19,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/include/deal.II/numerics/vector_tools.templates.h:20,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/source/numerics/vector_tools_boundary.cc:17:
/usr/include/boost/detail/no_exceptions_support.hpp: At global scope:
/usr/include/boost/detail/no_exceptions_support.hpp:17:1: note: ‘#pragma
message: This header is deprecated. Use <boost/core/no_exceptions_support.hpp>
instead.’
17 | BOOST_HEADER_DEPRECATED("<boost/core/no_exceptions_support.hpp>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/include/deal.II/grid/grid_tools.h:45,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/include/deal.II/numerics/vector_tools.templates.h:48,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/source/numerics/vector_tools_boundary.cc:17:
/usr/include/boost/geometry/index/detail/serialization.hpp: In static
member function ‘static
boost::geometry::index::detail::rtree::load<MembersHolder>::node_pointer
boost::geometry::index::detail::rtree::load<MembersHolder>::raw_apply(Archive&,
unsigned int,
boost::geometry::index::detail::rtree::load<MembersHolder>::size_type,
boost::geometry::index::detail::rtree::load<MembersHolder>::size_type&,
const parameters_type&, const translator_type&, boost::geometry::index::
detail::rtree::load<MembersHolder>::allocators_type&,
boost::geometry::index::detail::rtree::load<MembersHolder>::size_type)’:
/usr/include/boost/geometry/index/detail/serialization.hpp:399:49: error:
‘Allocators’ was not declared in this scope; did you mean ‘allocators’?
399 | node_pointer n = rtree::create_node<Allocators,
internal_node>::apply(allocators); // MAY THROW (A)
| ^~~~~~~~~~
| allocators
/usr/include/boost/geometry/index/detail/serialization.hpp:399:74: error:
template argument 1 is invalid
399 | node_pointer n = rtree::create_node<Allocators,
internal_node>::apply(allocators); // MAY THROW (A)
|
^
/usr/include/boost/geometry/index/detail/serialization.hpp:422:49: error:
‘Allocators’ was not declared in this scope; did you mean ‘allocators’?
422 | node_pointer n = rtree::create_node<Allocators,
leaf>::apply(allocators); // MAY THROW (A)
| ^~~~~~~~~~
| allocators
/usr/include/boost/geometry/index/detail/serialization.hpp:422:65: error:
template argument 1 is invalid
422 | node_pointer n = rtree::create_node<Allocators,
leaf>::apply(allocators); // MAY THROW (A)
| ^
/usr/include/boost/geometry/index/detail/serialization.hpp: In function
‘void boost::serialization::load(Archive&, boost::geometry::index::rtree<V,
P, I, E, A>&, unsigned int)’:
/usr/include/boost/geometry/index/detail/serialization.hpp:552:114: error:
wrong number of template arguments (5, should be 1)
552 | typedef detail::rtree::subtree_destroyer<value_type,
options_type, translator_type, box_type, allocators_type> subtree_destroyer;
|
^
In file included from /usr/include/boost/geometry/
index/detail/rtree/visitors/insert.hpp:26,
from /usr/include/boost/geometry/index/rtree.hpp:65,
from /usr/include/boost/geometry/algorithms/detail/within/
multi_point.hpp:33,
from /usr/include/boost/geometry/algorithms/detail/within/
implementation.hpp:42,
from /usr/include/boost/geometry/
algorithms/detail/covered_by/implementation.hpp:25,
from /usr/include/boost/geometry/
algorithms/covered_by.hpp:24,
from /usr/include/boost/geometry/algorithms/detail/buffer/
buffered_piece_collection.hpp:28,
from /usr/include/boost/geometry/algorithms/detail/buffer/
buffer_inserter.hpp:35,
from /usr/include/boost/geometry/algorithms/buffer.hpp:41,
from /usr/include/boost/geometry/geometry.hpp:63,
from /usr/include/boost/geometry.hpp:17,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/include/deal.II/base/point.h:26,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/include/deal.II/base/function.h:24,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/include/deal.II/numerics/vector_tools.templates.h:21,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/source/numerics/vector_tools_boundary.cc:17:
/usr/include/boost/geometry/index/detail/rtree/node/subtree_destroyer.hpp:25:7:
note: provided for ‘template<class MembersHolder> class
boost::geometry::index::detail::rtree::subtree_destroyer’
25 | class subtree_destroyer
| ^~~~~~~~~~~~~~~~~
In file included from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/include/deal.II/grid/grid_tools.h:45,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/include/deal.II/numerics/vector_tools.templates.h:48,
from /home/newton/dealii-candi/tmp/
unpack/deal.II-v9.1.1/source/numerics/vector_tools_boundary.cc:17:
/usr/include/boost/geometry/index/detail/serialization.hpp:566:101: error:
wrong number of template arguments (5, should be 1)
566 | n = detail::rtree::load<value_type, options_type,
translator_type, box_type, allocators_type>
|
^
/usr/include/boost/geometry/index/detail/serialization.hpp:347:7: note:
provided for ‘template<class MembersHolder> class boost::geometry::index::
detail::rtree::load’
347 | class load
| ^~~~
/usr/include/boost/geometry/index/detail/serialization.hpp:569:65: error:
expression list treated as compound expression in initializer [-fpermissive]
569 | subtree_destroyer remover(n, tree.members().allocators());
| ^
/usr/include/boost/geometry/index/detail/serialization.hpp:572:17: error:
request for member ‘release’ in ‘remover’, which is of non-class type
‘subtree_destroyer’ {aka ‘int’}
572 | remover.release();
| ^~~~~~~
/usr/include/boost/geometry/index/detail/serialization.hpp:579:79: error:
expression list treated as compound expression in initializer [-fpermissive]
579 | subtree_destroyer remover(tree.members().root,
tree.members().allocators());
|
^
make[2]: *** [source/numerics/CMakeFiles/obj_numerics_debug.dir/build.make:230:
source/numerics/CMakeFiles/obj_numerics_debug.dir/vector_tools_boundary.cc.o]
Error 1
make[1]: *** [CMakeFiles/Makefile2:2820:
source/numerics/CMakeFiles/obj_numerics_debug.dir/all]
Error 2
make: *** [Makefile:136: all] Error 2
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