Hi Bruno, Thanks for your help! After removing ginkgo and testing several additional dependency combinations, the following spack install worked for me and I'm leaving it here in case someone else runs into a similar issue.
spack install dealii@9.2.0 +p4est ~ginkgo ^muparser@2.2.6.1 ^boost@1.76.0 cxxstd=11 ^trilinos@13.0.1 %gcc@12.2.0 There are probably alternative combinations which would work with ginkgo, but the builds take a while so I have not tried most of them. Best, Andrew On Friday, June 23, 2023 at 3:28:49 PM UTC-4 bruno.t...@gmail.com wrote: > It looks like the error you get when using cxx=11 is from ginkgo so if you > don't need ginkgo, you could try something like > > spack install dea...@9.2.0 ~ginkgo ^bo...@1.76.0 cxxstd=11 %g...@12.2.0 > > Bruno > > Le ven. 23 juin 2023 à 14:47, Andrew Li <a...@andrew.cmu.edu> a écrit : > >> Unfortunately dea...@9.2.0 seems to be incompatible with boost versions >> greater than v1.77 according to spack >> >> ==> Error: concretization failed for the following reasons: >> >> 1. Cannot select a single "version" for package "boost" >> 2. Cannot satisfy 'boost@:1.77.0' >> 3. Cannot satisfy 'boost@:1.76' >> 4. Cannot satisfy 'bo...@1.82' >> 5. Cannot satisfy 'bo...@1.59.0:1.63,1.65.1,1.67.0:1.79' >> >> Best, >> Andrew >> On Friday, June 23, 2023 at 2:43:08 PM UTC-4 bruno.t...@gmail.com wrote: >> >>> The error is from here >>> >>> In file included from ./boost/math/tools/mp.hpp:341, >>> from ./boost/math/policies/policy.hpp:11, >>> from ./boost/math/special_functions/math_fwd.hpp:31, >>> from ./boost/math/special_functions/airy.hpp:11, >>> from ./boost/math/special_functions.hpp:15, >>> from libs/math/build/../src/tr1/pch.hpp:9: >>> /home/al5/.spack/opt/spack/linux-centos7-broadwell/gcc-11.2.0/gcc-12.2.0-lwc56owtziygs5xlu3yqpulfp6fvaulb/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/utility:94:14: >>> >>> error: '__and_' was not declared in this scope; did you mean 'std::__and_'? >>> 94 | noexcept(__and_<is_nothrow_move_constructible<_Tp>, >>> | ^~~~~~ >>> | std::__and_ >>> >>> I don't see ./boost/math/tools/mp.hpp in version 1.82 of boost. Does >>> that one work? >>> >>> Bruno >>> >>> Le ven. 23 juin 2023 à 14:23, Andrew Li <a...@andrew.cmu.edu> a écrit : >>> >>>> Hi Bruno, >>>> >>>> I've attached the output file spack generated with the original error >>>> message. I changed the c++ standard originally because I saw a similar >>>> problem on this link (https://github.com/spack/spack/issues/15869). >>>> Currently I'm trying various boost versions with dea...@9.2.0, as well as >>>> versions down to dea...@9.0.0. So far nothing has worked yet. >>>> >>>> Best, >>>> Andrew >>>> >>>> On Friday, June 23, 2023 at 1:01:17 PM UTC-4 Andrew Li wrote: >>>> >>>>> I assume the error has changed because spack automatically found the >>>>> new boost package which has been installed using cxxstd=11. In fact, >>>>> specifying the boost installation to cxxstd=17 again reproduces the >>>>> original error message. I'm rerunning that installation to get the >>>>> build-log file now >>>>> >>>>> >>>>> On Friday, June 23, 2023 at 12:39:24 PM UTC-4 Andrew Li wrote: >>>>> >>>>>> Hi Bruno, >>>>>> >>>>>> Thanks for your quick response! The error message I get when i run >>>>>> [al5@coe ~]$ srun --mem-per-cpu=16G spack install dea...@9.2.0 >>>>>> %g...@12.2.0 >>>>>> >>>>>> is >>>>>> >>>>>> ==> Installing dealii-9.2.0-27ysq7kvk7cdu7t2a6jjqmls4qd5fsbc >>>>>> ==> No binary for dealii-9.2.0-27ysq7kvk7cdu7t2a6jjqmls4qd5fsbc >>>>>> found: installing from source >>>>>> >>>>>> 1 out of 1 hunk FAILED -- saving rejects to file >>>>>> cmake/modules/FindGINKGO.cmake.rej >>>>>> 1 out of 1 hunk FAILED -- saving rejects to file >>>>>> cmake/modules/FindGINKGO.cmake.rej >>>>>> ==> Using cached archive: >>>>>> /home/al5/.spack/var/spack/cache/_source-cache/archive/d0/d05a82fb40f1f1e24407451814b5a6004e39366a44c81208b1ae9d65f3efa43a.tar.gz >>>>>> ==> Using cached archive: >>>>>> /home/al5/.spack/var/spack/cache/_source-cache/archive/c9/c9884ebb0fe379c539012a225d8bcdcfe288edec8dc9d319fbfd64d8fbafba8e >>>>>> >>>>>> ==> Patch >>>>>> https://github.com/dealii/dealii/commit/df6c5de8d6785fce701c10575982858f3aeb4cbd.patch?full_index=1 >>>>>> >>>>>> failed. >>>>>> ==> Error: ProcessError: Command exited with status 1: >>>>>> '/usr/bin/patch' '-s' '-p' '1' '-i' >>>>>> '/tmp/al5/spack-stage/spack-stage-fd9czbgb/df6c5de8d6785fce701c10575982858f3aeb4cbd.patch?full_index=1' >>>>>> >>>>>> '-d' '.' >>>>>> srun: error: e001: task 0: Exited with exit code 1 >>>>>> >>>>>> I have also tried specifying boost to bo...@1.72 and bo...@1.68. the >>>>>> error is the same as the one above. >>>>>> >>>>>> Best, >>>>>> Andrew >>>>>> >>>>>> On Friday, June 23, 2023 at 11:53:58 AM UTC-4 bruno.t...@gmail.com >>>>>> wrote: >>>>>> >>>>>>> Andrew, >>>>>>> >>>>>>> What's the error message that you get when using `spack install >>>>>>> dea...@9.2.0 %g...@12.2.0` ? spack writes the exact error in an output >>>>>>> file. I don't think changing the C++ standard is the right fix, instead >>>>>>> I >>>>>>> would change the version of boost. >>>>>>> >>>>>>> Best, >>>>>>> >>>>>>> Bruno >>>>>>> >>>>>>> On Friday, June 23, 2023 at 10:15:08 AM UTC-4 a...@andrew.cmu.edu >>>>>>> wrote: >>>>>>> >>>>>>>> Dear all, >>>>>>>> >>>>>>>> I hope this is the right place to post this question. I am trying >>>>>>>> to install an older version of dealii on a centos7 cluster using >>>>>>>> spack, and >>>>>>>> am running into issues. I have no problem installing dea...@9.4.2, but >>>>>>>> am >>>>>>>> unable to install dea...@9.2.0. >>>>>>>> >>>>>>>> If I run without specifying boost cxxstd >>>>>>>> >>>>>>>> spack install dea...@9.2.0 %g...@12.2.0 >>>>>>>> >>>>>>>> I get an error >>>>>>>> >>>>>>>> ==> boost: Executing phase: 'install' >>>>>>>> ==> Error: ProcessError: Command exited with status 1: >>>>>>>> './b2' 'install' 'threading=multi' '-j' '4' >>>>>>>> '--user-config=/tmp/al5/spack-stage/spack-stage-boost-1.76.0-2ykrczt6n7igaz645shnq2pscuosk3al/spack-src/user-config.jam' >>>>>>>> >>>>>>>> 'variant=release' '--disable-icu' '-s' >>>>>>>> 'BZIP2_INCLUDE=/home/al5/.spack/opt/spack/linux-centos7-broadwell/gcc-12.2.0/bzip2-1.0.8-lhu2fvk3ssx5w66tth4tp6kjorlgfj2u/include' >>>>>>>> >>>>>>>> '-s' >>>>>>>> 'BZIP2_LIBPATH=/home/al5/.spack/opt/spack/linux-centos7-broadwell/gcc-12.2.0/bzip2-1.0.8-lhu2fvk3ssx5w66tth4tp6kjorlgfj2u/lib' >>>>>>>> >>>>>>>> '-s' >>>>>>>> 'ZLIB_INCLUDE=/home/al5/.spack/opt/spack/linux-centos7-broadwell/gcc-12.2.0/zlib-1.2.13-qemlwst2qu3yyrmrlgdnomlmzbjsgs34/include' >>>>>>>> >>>>>>>> '-s' >>>>>>>> 'ZLIB_LIBPATH=/home/al5/.spack/opt/spack/linux-centos7-broadwell/gcc-12.2.0/zlib-1.2.13-qemlwst2qu3yyrmrlgdnomlmzbjsgs34/lib' >>>>>>>> >>>>>>>> '-s' >>>>>>>> 'LZMA_INCLUDE=/home/al5/.spack/opt/spack/linux-centos7-broadwell/gcc-12.2.0/xz-5.4.1-lux543af2a73htjercpienfpkmx64zez/include' >>>>>>>> >>>>>>>> '-s' >>>>>>>> 'LZMA_LIBPATH=/home/al5/.spack/opt/spack/linux-centos7-broadwell/gcc-12.2.0/xz-5.4.1-lux543af2a73htjercpienfpkmx64zez/lib' >>>>>>>> >>>>>>>> '-s' >>>>>>>> 'ZSTD_INCLUDE=/home/al5/.spack/opt/spack/linux-centos7-broadwell/gcc-12.2.0/zstd-1.5.5-gfcgznqbaijyvpybcdyqkpjhzc3zylg2/include' >>>>>>>> >>>>>>>> '-s' >>>>>>>> 'ZSTD_LIBPATH=/home/al5/.spack/opt/spack/linux-centos7-broadwell/gcc-12.2.0/zstd-1.5.5-gfcgznqbaijyvpybcdyqkpjhzc3zylg2/lib' >>>>>>>> >>>>>>>> 'link=static,shared' '--layout=system' 'toolset=gcc' 'cxxstd=17' >>>>>>>> 'visibility=hidden' >>>>>>>> >>>>>>>> If I run with either setting boost cxxstd=11 or 98 >>>>>>>> >>>>>>>> spack install dea...@9.2.0 ^bo...@1.76.0 cxxstd=11 %g...@12.2.0, >>>>>>>> >>>>>>>> I get the error >>>>>>>> >>>>>>>> 1 out of 1 hunk FAILED -- saving rejects to file >>>>>>>> cmake/modules/FindGINKGO.cmake.rej >>>>>>>> 1 out of 1 hunk FAILED -- saving rejects to file >>>>>>>> cmake/modules/FindGINKGO.cmake.rej >>>>>>>> ==> Using cached archive: >>>>>>>> /home/al5/.spack/var/spack/cache/_source-cache/archive/d0/d05a82fb40f1f1e24407451814b5a6004e39366a44c81208b1ae9d65f3efa43a.tar.gz >>>>>>>> ==> Using cached archive: >>>>>>>> /home/al5/.spack/var/spack/cache/_source-cache/archive/90/90ae9ddefe77fffd297bba6b070ab68d07306d4ef525ee994e8c49cef68f76f3 >>>>>>>> ==> Using cached archive: >>>>>>>> /home/al5/.spack/var/spack/cache/_source-cache/archive/c9/c9884ebb0fe379c539012a225d8bcdcfe288edec8dc9d319fbfd64d8fbafba8e >>>>>>>> ==> Applied patch >>>>>>>> https://github.com/dealii/dealii/commit/3b815e21c4bfd82c792ba80e4d90314c8bb9edc9.patch?full_index=1 >>>>>>>> ==> Patch >>>>>>>> https://github.com/dealii/dealii/commit/df6c5de8d6785fce701c10575982858f3aeb4cbd.patch?full_index=1 >>>>>>>> >>>>>>>> failed. >>>>>>>> ==> Error: ProcessError: Command exited with status 1: >>>>>>>> '/usr/bin/patch' '-s' '-p' '1' '-i' >>>>>>>> '/tmp/al5/spack-stage/spack-stage-s5pzaunz/df6c5de8d6785fce701c10575982858f3aeb4cbd.patch?full_index=1' >>>>>>>> >>>>>>>> '-d' '.' >>>>>>>> >>>>>>>> Can anyone advise me on what to do? >>>>>>>> >>>>>>>> Thank you, >>>>>>>> Andrew >>>>>>>> >>>>>>> -- >>>> The deal.II project is located at http://www.dealii.org/ >>>> For mailing list/forum options, see >>>> https://groups.google.com/d/forum/dealii?hl=en >>>> --- >>>> You received this message because you are subscribed to a topic in the >>>> Google Groups "deal.II User Group" group. >>>> To unsubscribe from this topic, visit >>>> https://groups.google.com/d/topic/dealii/m1B0WyihX1E/unsubscribe. >>>> To unsubscribe from this group and all its topics, send an email to >>>> dealii+un...@googlegroups.com. >>>> To view this discussion on the web visit >>>> https://groups.google.com/d/msgid/dealii/81f5863c-e723-49c8-a044-4c7b0e85cc18n%40googlegroups.com >>>> >>>> <https://groups.google.com/d/msgid/dealii/81f5863c-e723-49c8-a044-4c7b0e85cc18n%40googlegroups.com?utm_medium=email&utm_source=footer> >>>> . >>>> >>> -- >> The deal.II project is located at http://www.dealii.org/ >> For mailing list/forum options, see >> https://groups.google.com/d/forum/dealii?hl=en >> --- >> You received this message because you are subscribed to a topic in the >> Google Groups "deal.II User Group" group. >> To unsubscribe from this topic, visit >> https://groups.google.com/d/topic/dealii/m1B0WyihX1E/unsubscribe. >> To unsubscribe from this group and all its topics, send an email to >> dealii+un...@googlegroups.com. >> > To view this discussion on the web visit >> https://groups.google.com/d/msgid/dealii/03fa41be-b0bc-49b6-866a-a17d4b5281ebn%40googlegroups.com >> >> <https://groups.google.com/d/msgid/dealii/03fa41be-b0bc-49b6-866a-a17d4b5281ebn%40googlegroups.com?utm_medium=email&utm_source=footer> >> . >> > -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. 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