Your message dated Fri, 06 Apr 2007 06:17:02 +0000
with message-id <[EMAIL PROTECTED]>
and subject line Bug#413477: fixed in amap-align 2.0-2
has caused the attached Bug report to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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Debian bug tracking system administrator
(administrator, Debian Bugs database)
--- Begin Message ---
Package: amap-align
Version: 2.0-1
Usertags: ftbfs-gcc-4.3
Tags: patch
Your package fails to build with GCC 4.3. Version 4.3 has not been
released yet but I'm building with a snapshot in order to find errors
and give people an advance warning. A patch for this problem is
below.
> Automatic build of amap-align_2.0-1 on em64t by sbuild/amd64 0.53
...
> make[1]: Entering directory `/build/tbm/amap-align-2.0'
> g++ -O3 -W -Wall -pedantic -DNDEBUG -DNumInsertStates=1
> -DVERSION='"AMAP.2.0"' -funroll-loops -lm -o amap Amap.cc
> In file included from Amap.cc:12:
> ProbabilisticModel.h: In member function 'void
> ProbabilisticModel::ComputeNewParameters(Sequence*, Sequence*, const VF&,
> const VF&, VF&, VF&, VF&, VVF&, VF&, bool) const':
> ProbabilisticModel.h:504: warning: suggest parentheses around && within ||
> Amap.cc: In function 'bool GetInteger(char*, int*)':
> Amap.cc:586: error: 'LONG_MAX' was not declared in this scope
> Amap.cc:586: error: 'LONG_MIN' was not declared in this scope
> Amap.cc:587: error: 'INT_MIN' was not declared in this scope
> Amap.cc:587: error: 'INT_MAX' was not declared in this scope
> make[1]: *** [amap] Error 1
> make[1]: Leaving directory `/build/tbm/amap-align-2.0'
--- Amap.cc~ 2007-03-05 11:29:54.000000000 +0000
+++ Amap.cc 2007-03-05 11:30:58.000000000 +0000
@@ -12,6 +12,7 @@
#include "ProbabilisticModel.h"
#include "EvolutionaryTree.h"
#include "SparseMatrix.h"
+#include <climits>
#include <string>
#include <sstream>
#include <iomanip>
--
Martin Michlmayr
http://www.cyrius.com/
--- End Message ---
--- Begin Message ---
Source: amap-align
Source-Version: 2.0-2
We believe that the bug you reported is fixed in the latest version of
amap-align, which is due to be installed in the Debian FTP archive:
amap-align_2.0-2.diff.gz
to pool/main/a/amap-align/amap-align_2.0-2.diff.gz
amap-align_2.0-2.dsc
to pool/main/a/amap-align/amap-align_2.0-2.dsc
amap-align_2.0-2_i386.deb
to pool/main/a/amap-align/amap-align_2.0-2_i386.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [EMAIL PROTECTED],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <[EMAIL PROTECTED]> (supplier of updated amap-align package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [EMAIL PROTECTED])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.7
Date: Sat, 17 Mar 2007 22:16:34 +0900
Source: amap-align
Binary: amap-align
Architecture: source i386
Version: 2.0-2
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team <[EMAIL PROTECTED]>
Changed-By: Charles Plessy <[EMAIL PROTECTED]>
Description:
amap-align - Protein multiple alignment by sequence annealing
Closes: 413477
Changes:
amap-align (2.0-2) unstable; urgency=low
.
* Added Subversion repository URL to debian/control.
* Patched for building with gcc-4.3. Many thanks to Martin Michlmayr
(Closes:413477)
* Renamed /usr/bin/amap-align to /usr/bin/amap, providing a wrapper for
compatibility.
* Included /usr/share/dpatch/dpatch.make in debian/rules.
* Improved manpage using the template of docbook-xsl 1.71.0.dfsg.1-1.1.
* Fixed double-building in debian/rules.
Files:
1d19b088a2ce0bcd3943af31d9996873 861 science optional amap-align_2.0-2.dsc
08d64d2716d2a5c4e8d88309bd016920 5951 science optional amap-align_2.0-2.diff.gz
2ad17bb2a1ceadb336695aa8aa3f3269 99040 science optional
amap-align_2.0-2_i386.deb
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--- End Message ---
