Your message dated Tue, 04 Dec 2007 16:32:09 +0000
with message-id <[EMAIL PROTECTED]>
and subject line Bug#452991: fixed in python-scipy 0.6.0-4
has caused the attached Bug report to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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(administrator, Debian Bugs database)
--- Begin Message ---
Package: python-scipy
Version: 0.6.0-3
Severity: normal
Hello,
when running scipy.test(level=1) with python2.4 or python2.5 it fails
giving an "Illegal instruction" and the interpreter returns with 132.
The output is the following:
[EMAIL PROTECTED]:~$ python2.4
Python 2.4.4 (#2, Aug 16 2007, 02:03:40)
[GCC 4.1.3 20070812 (prerelease) (Debian 4.1.2-15)] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import scipy
>>> scipy.test(level=1)
Found 9 tests for scipy.cluster.vq
Found 18 tests for scipy.fftpack.basic
Found 4 tests for scipy.fftpack.helper
Found 20 tests for scipy.fftpack.pseudo_diffs
Found 1 tests for scipy.integrate
Found 10 tests for scipy.integrate.quadpack
Found 3 tests for scipy.integrate.quadrature
Found 6 tests for scipy.interpolate
Found 6 tests for scipy.interpolate.fitpack
Found 4 tests for scipy.io.array_import
Found 28 tests for scipy.io.mio
Found 13 tests for scipy.io.mmio
Found 5 tests for scipy.io.npfile
Found 4 tests for scipy.io.recaster
Found 16 tests for scipy.lib.blas
Found 128 tests for scipy.lib.blas.fblas
****************************************************************
WARNING: clapack module is empty
-----------
See scipy/INSTALL.txt for troubleshooting.
Notes:
* If atlas library is not found by numpy/distutils/system_info.py,
then scipy uses flapack instead of clapack.
****************************************************************
Found 42 tests for scipy.lib.lapack
Found 41 tests for scipy.linalg.basic
<module 'scipy.linalg.fblas' from
'/usr/lib/python2.4/site-packages/scipy/linalg/fblas.so'>
Found 16 tests for scipy.linalg.blas
Found 72 tests for scipy.linalg.decomp
Found 128 tests for scipy.linalg.fblas
Found 6 tests for scipy.linalg.iterative
Found 4 tests for scipy.linalg.lapack
Found 7 tests for scipy.linalg.matfuncs
Found 9 tests for scipy.linsolve.umfpack
Found 2 tests for scipy.maxentropy
Found 3 tests for scipy.misc.pilutil
Found 399 tests for scipy.ndimage
Found 5 tests for scipy.odr
Found 8 tests for scipy.optimize
Found 1 tests for scipy.optimize.cobyla
Found 10 tests for scipy.optimize.nonlin
Found 4 tests for scipy.optimize.zeros
Found 5 tests for scipy.signal.signaltools
Found 4 tests for scipy.signal.wavelets
Found 152 tests for scipy.sparse
Found 342 tests for scipy.special.basic
Found 3 tests for scipy.special.spfun_stats
Found 107 tests for scipy.stats
Found 73 tests for scipy.stats.distributions
Found 10 tests for scipy.stats.morestats
Found 0 tests for __main__
.../usr/lib/python2.4/site-packages/scipy/cluster/vq.py:477: UserWarning: One
of the clusters is empty. Re-run kmean with a different initialization.
warnings.warn("One of the clusters is empty. "
exception raised as expected: One of the clusters is empty. Re-run kmean with a
different initialization.
................................................Residual: 1.05006950608e-07
..................../usr/lib/python2.4/site-packages/scipy/interpolate/fitpack2.py:458:
UserWarning:
The coefficients of the spline returned have been computed as the
minimal norm least-squares solution of a (numerically) rank deficient
system (deficiency=7). If deficiency is large, the results may be
inaccurate. Deficiency may strongly depend on the value of eps.
warnings.warn(message)
......
Don't worry about a warning regarding the number of bytes read.
Warning: 1000000 bytes requested, 20 bytes read.
.........................................................................caxpy:n=4
..caxpy:n=3
....ccopy:n=4
..ccopy:n=3
.............cscal:n=4
....cswap:n=4
..cswap:n=3
.....daxpy:n=4
..daxpy:n=3
....dcopy:n=4
..dcopy:n=3
.............dscal:n=4
....dswap:n=4
..dswap:n=3
.....saxpy:n=4
..saxpy:n=3
....scopy:n=4
..scopy:n=3
.............sscal:n=4
....sswap:n=4
..sswap:n=3
.....zaxpy:n=4
..zaxpy:n=3
....zcopy:n=4
..zcopy:n=3
.............zscal:n=4
....zswap:n=4
..zswap:n=3
.....................................................................................
****************************************************************
WARNING: cblas module is empty
-----------
See scipy/INSTALL.txt for troubleshooting.
Notes:
* If atlas library is not found by numpy/distutils/system_info.py,
then scipy uses fblas instead of cblas.
****************************************************************
...........................................................................................caxpy:n=4
..caxpy:n=3
....ccopy:n=4
..ccopy:n=3
.............cscal:n=4
....cswap:n=4
..cswap:n=3
.....daxpy:n=4
..daxpy:n=3
....dcopy:n=4
..dcopy:n=3
.............dscal:n=4
....dswap:n=4
..dswap:n=3
.....saxpy:n=4
..saxpy:n=3
....scopy:n=4
..scopy:n=3
.............sscal:n=4
....sswap:n=4
..sswap:n=3
.....zaxpy:n=4
..zaxpy:n=3
....zcopy:n=4
..zcopy:n=3
.............zscal:n=4
....zswap:n=4
..zswap:n=3
..........
****************************************************************
WARNING: clapack module is empty
-----------
See scipy/INSTALL.txt for troubleshooting.
Notes:
* If atlas library is not found by numpy/distutils/system_info.py,
then scipy uses flapack instead of clapack.
****************************************************************
...Result may be inaccurate, approximate err = 7.03967518032e-09
...Result may be inaccurate, approximate err = 7.27595761418e-12
......Use minimum degree ordering on A'+A.
..Use minimum degree ordering on A'+A.
...Use minimum degree ordering on A'+A.
............................................................................................................./usr/lib/python2.4/site-packages/scipy/ndimage/interpolation.py:41:
UserWarning: Mode "reflect" may yield incorrect results on boundaries. Please
use "mirror" instead.
warnings.warn('Mode "reflect" may yield incorrect results on '
.............................................................................................Illegal
instruction
[EMAIL PROTECTED]:~$
If you need more information or want me to run different tests I'll be
happy to help you.
Regards,
eike
-- System Information:
Debian Release: lenny/sid
APT prefers testing
APT policy: (990, 'testing'), (102, 'unstable'), (101, 'stable')
Architecture: i386 (i686)
Kernel: Linux 2.6.22-2-686 (SMP w/1 CPU core)
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash
Versions of packages python-scipy depends on:
pn atlas3-base | refblas3 | libb <none> (no description available)
ii atlas3-sse2 [liblapack.so.3] 3.6.0-20.6 Automatically Tuned Linear Algebra
ii libc6 2.6.1-1+b1 GNU C Library: Shared libraries
ii libfftw3-3 3.1.2-3 library for computing Fast Fourier
ii libg2c0 1:3.4.6-6 Runtime library for GNU Fortran 77
ii libgcc1 1:4.2.2-3 GCC support library
ii libstdc++6 4.2.2-3 The GNU Standard C++ Library v3
ii libsuitesparse 3.0.0-7 collection of libraries for comput
ii python 2.4.4-6 An interactive high-level object-o
ii python-central 0.5.15 register and build utility for Pyt
ii python-imaging 1.1.6-1 Python Imaging Library
ii python-numpy 1:1.0.3-1 Numerical Python adds a fast array
Versions of packages python-scipy recommends:
ii g++ [c++-compiler] 4:4.2.1-6 The GNU C++ compiler
ii g++-4.2 [c++-compiler] 4.2.2-3 The GNU C++ compiler
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: python-scipy
Source-Version: 0.6.0-4
We believe that the bug you reported is fixed in the latest version of
python-scipy, which is due to be installed in the Debian FTP archive:
python-scipy_0.6.0-4.diff.gz
to pool/main/p/python-scipy/python-scipy_0.6.0-4.diff.gz
python-scipy_0.6.0-4.dsc
to pool/main/p/python-scipy/python-scipy_0.6.0-4.dsc
python-scipy_0.6.0-4_amd64.deb
to pool/main/p/python-scipy/python-scipy_0.6.0-4_amd64.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [EMAIL PROTECTED],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Ondrej Certik <[EMAIL PROTECTED]> (supplier of updated python-scipy package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [EMAIL PROTECTED])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.7
Date: Mon, 03 Dec 2007 15:33:24 +0100
Source: python-scipy
Binary: python-scipy
Architecture: source amd64
Version: 0.6.0-4
Distribution: unstable
Urgency: low
Maintainer: Debian Python Modules Team <[EMAIL PROTECTED]>
Changed-By: Ondrej Certik <[EMAIL PROTECTED]>
Description:
python-scipy - scientific tools for Python
Closes: 452991
Changes:
python-scipy (0.6.0-4) unstable; urgency=low
.
* Use quilt (much eaiser to use) instead of dpatch
* Paul's patch added (Closes: #452991)
* Add DM-Upload-Allowed: yes
Files:
b6337b89193986f253a6366e121288ea 1202 python extra python-scipy_0.6.0-4.dsc
ac2a641d2339bbd0b63da4c7b8cb16cb 7184 python extra python-scipy_0.6.0-4.diff.gz
a165f515bbcda82c6dbe6605f6e89c0b 6957258 python extra
python-scipy_0.6.0-4_amd64.deb
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--- End Message ---
