Your message dated Wed, 16 Apr 2008 16:47:03 +0000
with message-id <[EMAIL PROTECTED]>
and subject line Bug#436815: fixed in epcr 2.3.9-1
has caused the Debian Bug report #436815,
regarding epcr: not handling nostrip build option (policy 10.1)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
436815: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=436815
Debian Bug Tracking System
Contact [EMAIL PROTECTED] with problems
--- Begin Message ---
Package: epcr
Version: 1.2.0-3
Severity: wishlist
User: [EMAIL PROTECTED]
Usertags: nostrip
Hello,
There was a problem while autobuilding your package with
DEB_BUILD_OPTIONS=nostrip.
Final binaries are still stripped.
If you call dh_strip correctly in debian/rules, this may mean that upstream
is stripping anyway.
You should look for call to strip, ld -s or install -s which may strip binaries.
> Automatic build of epcr_1.2.0-3 on octave for sid/i386 by rebuildd 0.2.1
> Build started at 2007-08-09 01:14:56.805826
> ******************************************************************************
> Reading package lists...
> Building dependency tree...
> Reading state information...
> Need to get 1906kB of source archives.
> Get:1 http://ftp.fr.debian.org sid/main epcr 1.2.0-3 (dsc) [598B]
> Get:2 http://ftp.fr.debian.org sid/main epcr 1.2.0-3 (tar) [1901kB]
> Get:3 http://ftp.fr.debian.org sid/main epcr 1.2.0-3 (diff) [5121B]
> Fetched 1906kB in 1m4s (29.4kB/s)
> Download complete and in download only mode
> W: /home/staff/jd/.pbuilderrc does not exist
> I: using fakeroot in build.
> Current time: Thu Aug 9 01:16:04 UTC 2007
> pbuilder-time-stamp: 1186622164
> Building the build Environment
> -> extracting base tarball [/var/cache/pbuilder/sid.tgz]
> -> creating local configuration
> -> copying local configuration
> -> mounting /proc filesystem
> -> mounting /dev/pts filesystem
> -> policy-rc.d already exists
> Obtaining the cached apt archive contents
> Installing the build-deps
> -> Attempting to parse the build-deps
> -> Considering build-dep debhelper (>= 4.0.0)
> -> Trying debhelper
> -> Considering build-dep docbook-to-man
> -> Trying docbook-to-man
> -> Installing debhelper docbook-to-man
> Reading package lists...
> Building dependency tree...
> Reading state information...
> The following extra packages will be installed:
> docbook file gettext gettext-base html2text intltool-debian libmagic1
> libsp1c2 po-debconf sgml-base sgml-data sp xml-core
> Suggested packages:
> dh-make psgml docbook-xml docbook-dsssl cvs gettext-doc sgml-base-doc
> perlsgml doc-html-w3 opensp libxml2-utils doc-base
> Recommended packages:
> curl wget lynx libmail-sendmail-perl libcompress-zlib-perl
> The following NEW packages will be installed:
> debhelper docbook docbook-to-man file gettext gettext-base html2text
> intltool-debian libmagic1 libsp1c2 po-debconf sgml-base sgml-data sp
> xml-core
> debconf: delaying package configuration, since apt-utils is not installed
> 0 upgraded, 15 newly installed, 0 to remove and 0 not upgraded.
> Need to get 0B/5812kB of archives.
> After unpacking 20.5MB of additional disk space will be used.
> Selecting previously deselected package libmagic1.
> (Reading database ... 8965 files and directories currently installed.)
> Unpacking libmagic1 (from .../libmagic1_4.21-2_i386.deb) ...
> Selecting previously deselected package file.
> Unpacking file (from .../archives/file_4.21-2_i386.deb) ...
> Selecting previously deselected package gettext-base.
> Unpacking gettext-base (from .../gettext-base_0.16.1-2_i386.deb) ...
> Selecting previously deselected package html2text.
> Unpacking html2text (from .../html2text_1.3.2a-3_i386.deb) ...
> Selecting previously deselected package gettext.
> Unpacking gettext (from .../gettext_0.16.1-2_i386.deb) ...
> Selecting previously deselected package intltool-debian.
> Unpacking intltool-debian (from
> .../intltool-debian_0.35.0+20060710.1_all.deb) ...
> Selecting previously deselected package po-debconf.
> Unpacking po-debconf (from .../po-debconf_1.0.9_all.deb) ...
> Selecting previously deselected package debhelper.
> Unpacking debhelper (from .../debhelper_5.0.53_all.deb) ...
> Selecting previously deselected package sgml-base.
> Unpacking sgml-base (from .../sgml-base_1.26_all.deb) ...
> Selecting previously deselected package xml-core.
> Unpacking xml-core (from .../archives/xml-core_0.11_all.deb) ...
> Selecting previously deselected package sgml-data.
> Unpacking sgml-data (from .../sgml-data_2.0.3_all.deb) ...
> Selecting previously deselected package docbook.
> Unpacking docbook (from .../archives/docbook_4.5-3_all.deb) ...
> Selecting previously deselected package libsp1c2.
> Unpacking libsp1c2 (from .../libsp1c2_1.3.4-1.2.1-47_i386.deb) ...
> Selecting previously deselected package sp.
> Unpacking sp (from .../sp_1.3.4-1.2.1-47_i386.deb) ...
> Selecting previously deselected package docbook-to-man.
> Unpacking docbook-to-man (from .../docbook-to-man_1%3a2.0.0-25_i386.deb) ...
> Setting up libmagic1 (4.21-2) ...
>
> Setting up file (4.21-2) ...
> Setting up gettext-base (0.16.1-2) ...
>
> Setting up html2text (1.3.2a-3) ...
>
> Setting up gettext (0.16.1-2) ...
>
> Setting up intltool-debian (0.35.0+20060710.1) ...
> Setting up po-debconf (1.0.9) ...
> Setting up debhelper (5.0.53) ...
> Setting up sgml-base (1.26) ...
>
> Setting up xml-core (0.11) ...
>
> Setting up sgml-data (2.0.3) ...
>
> Setting up docbook (4.5-3) ...
>
> Setting up libsp1c2 (1.3.4-1.2.1-47) ...
>
> Setting up sp (1.3.4-1.2.1-47) ...
>
> Setting up docbook-to-man (1:2.0.0-25) ...
> -> Finished parsing the build-deps
> Reading package lists...
> Building dependency tree...
> Reading state information...
> fakeroot is already the newest version.
> 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
> Copying back the cached apt archive contents
> Copying source file
> -> copying [epcr_1.2.0-3.dsc]
> -> copying [./epcr_1.2.0.orig.tar.gz]
> -> copying [./epcr_1.2.0-3.diff.gz]
> Extracting source
> gpg: can't open `/gnupg/options.skel': No such file or directory
> gpg: Signature made Wed Mar 31 05:05:06 2004 UTC using DSA key ID C09FD35A
> gpg: Can't check signature: public key not found
> dpkg-source: extracting epcr in epcr-1.2.0
> dpkg-source: unpacking epcr_1.2.0.orig.tar.gz
> dpkg-source: applying ./epcr_1.2.0-3.diff.gz
> -> Building the package
> Setting DEB_BUILD_OPTIONS=nostrip
> dpkg-buildpackage: source package is epcr
> dpkg-buildpackage: source version is 1.2.0-3
> dpkg-buildpackage: source changed by Steffen Moeller <[EMAIL PROTECTED]>
> dpkg-buildpackage: host architecture i386
> dpkg-buildpackage: source version without epoch 1.2.0-3
> fakeroot debian/rules clean
> dh_testdir
> dh_testroot
> rm -f build-stamp configure-stamp
> # Add here commands to clean up after the build process.
> /usr/bin/make clean
> make[1]: Entering directory `/tmp/buildd/epcr-1.2.0'
> (cd src && /usr/bin/make clean-all )
> make[2]: Entering directory `/tmp/buildd/epcr-1.2.0/src'
> rm -f *.o
> rm -f libseq.a e-PCR
> make[2]: Leaving directory `/tmp/buildd/epcr-1.2.0/src'
> make[1]: Leaving directory `/tmp/buildd/epcr-1.2.0'
> dh_clean debian/e-PCR.1
> dpkg-source -b epcr-1.2.0
> dpkg-source: building epcr using existing epcr_1.2.0.orig.tar.gz
> dpkg-source: building epcr in epcr_1.2.0-3.diff.gz
> dpkg-source: building epcr in epcr_1.2.0-3.dsc
> debian/rules build
> dh_testdir
> # Add here commands to configure the package.
> touch configure-stamp
> dh_testdir
> # Add here commands to compile the package.
> /usr/bin/make
> make[1]: Entering directory `/tmp/buildd/epcr-1.2.0'
> (cd src && /usr/bin/make all)
> make[2]: Entering directory `/tmp/buildd/epcr-1.2.0/src'
> g++ -O2 -I. `getconf LFS_CFLAGS` -c fasta-io.cpp
> g++ -O2 -I. `getconf LFS_CFLAGS` -c gdsutil.cpp
> g++ -O2 -I. `getconf LFS_CFLAGS` -c util.cpp
> rm -f libseq.a
> ar cru libseq.a fasta-io.o gdsutil.o util.o
> ranlib libseq.a
> g++ -O2 -I. `getconf LFS_CFLAGS` -c stsmatch.cpp
> g++ -O2 -I. `getconf LFS_CFLAGS` -o e-PCR e-PCR.cpp stsmatch.o `getconf
> LFS_LDFLAGS` `getconf LFS_LIBS` -L. -lseq
> make[2]: Leaving directory `/tmp/buildd/epcr-1.2.0/src'
> make[1]: Leaving directory `/tmp/buildd/epcr-1.2.0'
> /usr/bin/docbook-to-man debian/e-PCR.sgml > debian/e-PCR.1
> touch build-stamp
> fakeroot debian/rules binary
> dh_testdir
> dh_testroot
> dh_clean -k
> dh_installdirs
> # Add here commands to install the package into debian/e-pcr.
> /usr/bin/make install DESTDIR=/tmp/buildd/epcr-1.2.0/debian/ncbi-epcr
> make[1]: Entering directory `/tmp/buildd/epcr-1.2.0'
> (cd src && /usr/bin/make all)
> make[2]: Entering directory `/tmp/buildd/epcr-1.2.0/src'
> make[2]: Nothing to be done for `all'.
> make[2]: Leaving directory `/tmp/buildd/epcr-1.2.0/src'
> (cd src && /usr/bin/make install)
> make[2]: Entering directory `/tmp/buildd/epcr-1.2.0/src'
> ln -f /tmp/buildd/epcr-1.2.0/debian/ncbi-epcr/usr/bin/e-PCR
> /tmp/buildd/epcr-1.2.0/debian/ncbi-epcr/usr/bin/e-PCR% || true
> ln: accessing `/tmp/buildd/epcr-1.2.0/debian/ncbi-epcr/usr/bin/e-PCR': No
> such file or directory
> install -s e-PCR /tmp/buildd/epcr-1.2.0/debian/ncbi-epcr/usr/bin
> make[2]: Leaving directory `/tmp/buildd/epcr-1.2.0/src'
> mkdir -p /tmp/buildd/epcr-1.2.0/debian/ncbi-epcr-data/usr/share/ncbi/e-PCR/db
> && cp db/*
> /tmp/buildd/epcr-1.2.0/debian/ncbi-epcr-data/usr/share/ncbi/e-PCR/db
> mkdir -p
> /tmp/buildd/epcr-1.2.0/debian/ncbi-epcr-data/usr/share/ncbi/e-PCR/sample &&
> cp samples/*
> /tmp/buildd/epcr-1.2.0/debian/ncbi-epcr-data/usr/share/ncbi/e-PCR/samples
> make[1]: Leaving directory `/tmp/buildd/epcr-1.2.0'
> dh_testdir
> dh_testroot
> dh_installchangelogs
> dh_installdocs
> dh_installexamples
> dh_installman
> dh_link
> dh_strip
> dh_compress
> dh_fixperms
> dh_installdeb
> dh_shlibdeps
> dh_gencontrol
> dpkg-gencontrol: warning: unknown substitution variable ${misc:Depends}
> dpkg-gencontrol: warning: unknown substitution variable ${shlibs:Depends}
> dpkg-gencontrol: warning: unknown substitution variable ${misc:Depends}
> dh_md5sums
> dh_builddeb
> dpkg-deb: building package `ncbi-epcr' in `../ncbi-epcr_1.2.0-3_i386.deb'.
> dpkg-deb: building package `ncbi-epcr-data' in
> `../ncbi-epcr-data_1.2.0-3_all.deb'.
> dpkg-genchanges
> dpkg-genchanges: not including original source code in upload
> dpkg-buildpackage: binary and diff upload (original source NOT included)
> Copying back the cached apt archive contents
> -> unmounting dev/pts filesystem
> -> unmounting proc filesystem
> -> cleaning the build env
> -> removing directory /var/cache/pbuilder/build//29003 and its
> subdirectories
> Current time: Thu Aug 9 01:23:38 UTC 2007
> pbuilder-time-stamp: 1186622618
> Checking ncbi-epcr_1.2.0-3_i386.deb for stripped binaries...
> ---------------------------------------
> /tmp/ncbi-epcr_1.2.0-3_i386.deb/usr/bin/e-PCR: ELF 32-bit LSB executable,
> Intel 80386, version 1 (SYSV), for GNU/Linux 2.6.8, dynamically linked (uses
> shared libs), stripped
> Checking ncbi-epcr-data_1.2.0-3_all.deb for stripped binaries...
> ---------------------------------------
>
> ...done
> Removing result files...
> ...done
> ******************************************************************************
> Finished with status BUILD_FAILED at 2007-08-09 01:23:45.906304
> Build needed 0:08:49.100478
--
Julien Danjou
.''`. Debian Developer
: :' : http://julien.danjou.info
`. `' http://people.debian.org/~acid
`- 9A0D 5FD9 EB42 22F6 8974 C95C A462 B51E C2FE E5CD
signature.asc
Description: Digital signature
--- End Message ---
--- Begin Message ---
Source: epcr
Source-Version: 2.3.9-1
We believe that the bug you reported is fixed in the latest version of
epcr, which is due to be installed in the Debian FTP archive:
epcr_2.3.9-1.diff.gz
to pool/main/e/epcr/epcr_2.3.9-1.diff.gz
epcr_2.3.9-1.dsc
to pool/main/e/epcr/epcr_2.3.9-1.dsc
epcr_2.3.9.orig.tar.gz
to pool/main/e/epcr/epcr_2.3.9.orig.tar.gz
ncbi-epcr_2.3.9-1_i386.deb
to pool/main/e/epcr/ncbi-epcr_2.3.9-1_i386.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [EMAIL PROTECTED],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[EMAIL PROTECTED]> (supplier of updated epcr package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [EMAIL PROTECTED])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Wed, 16 Apr 2008 14:38:00 +0200
Source: epcr
Binary: ncbi-epcr
Architecture: source i386
Version: 2.3.9-1
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team <[EMAIL PROTECTED]>
Changed-By: Andreas Tille <[EMAIL PROTECTED]>
Description:
ncbi-epcr - Tool to test a DNA sequence for the presence of sequence tagged s
Closes: 241710 385256 436815
Changes:
epcr (2.3.9-1) unstable; urgency=low
.
* New upstream version
Closes: #385256
Upstream correctly handles strip option so this also
Closes: #436815
* There are no reasonable files targetting at a ncbi-epcr-data package
and thus this is dropped
Closes: #241710
because the issue of this bug becomes void
* Group maintenance by Debian-Med team
- DM-Upload-Allowed: Yes
- Vcs tags
- Use correct address as Uploader: Steffen Moeller <[EMAIL PROTECTED]>
* Removed [Biology] from short description
* Moved Homepage from long description to control fields and fixed
Homepage
* Standards-Version: 3.7.3 (no changes needed)
* debhelper >= 5
* Patches using quilt
* Use cdbs
* Updated long description according to text on web Homepage
* Just use (and fix) the docbook-to-man output rather than live with
the broken output
* Wrote man pages for re-PCR and fahash
*
Checksums-Sha1:
160638e463e57404d6e6766b85458145c455f5f7 1289 epcr_2.3.9-1.dsc
7d869b3c81015c3ede7f9a6739a3c3ae66e4775f 75505 epcr_2.3.9.orig.tar.gz
509c7c4fb6a650a9ae270726a7496c0eba3edc54 5416 epcr_2.3.9-1.diff.gz
566e8679544386540f8cf4e70aa61c3e52c18b52 191692 ncbi-epcr_2.3.9-1_i386.deb
Checksums-Sha256:
041f1824ba5ef01a04de36ab939df2e86c485a9fa6672046d06cf03b72f3d800 1289
epcr_2.3.9-1.dsc
a8d57493308ad294144b635ece0ed73ba1986ab7d1643361986a367a0ce820b1 75505
epcr_2.3.9.orig.tar.gz
df8401e61280858825421fd5d9695d518d7d4f851107f9c820d0c029cd8442e3 5416
epcr_2.3.9-1.diff.gz
929acd50af5eae534964980905a71800e060a9379a0371b5561d3caaf8881435 191692
ncbi-epcr_2.3.9-1_i386.deb
Files:
dcd76a4bfecbb316901e3df5ce12f001 1289 science extra epcr_2.3.9-1.dsc
d8eebbef7c3605f9ceaa3e92dfc04473 75505 science extra epcr_2.3.9.orig.tar.gz
df809212987c8f0232cfda32aa12b5c0 5416 science extra epcr_2.3.9-1.diff.gz
880c5b3652a09c751aa92068cb73c11f 191692 science extra
ncbi-epcr_2.3.9-1_i386.deb
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--- End Message ---
