Your message dated Thu, 5 Jun 2008 13:22:24 +0900
with message-id <[EMAIL PROTECTED]>
and subject line Patched in EMBOSS 5.0.0-7
has caused the Debian Bug report #476626,
regarding emboss: emma does not work with clustalw > 2.0
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
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--
476626: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=476626
Debian Bug Tracking System
Contact [EMAIL PROTECTED] with problems
--- Begin Message ---
Package: clustalw
Version: 2.0.5-1
Severity: important
Hi all,
User report on EMBOSS mailing list (
http://lists.open-bio.org/pipermail/emboss/2008-April/003253.html )
prompted me to check the situation of our packaged version of clustalw.
Indeed the 'emma' wrapper does not work with clustalw 2.04 or 2.05. I
quickly found out that the -outfile option of clustalw is broken. I
think that this causes the problem and will report the bug in upstream's
bugzilla.
Have a nice day,
-- Charles
-- System Information:
Debian Release: lenny/sid
APT prefers unstable
APT policy: (500, 'unstable'), (500, 'testing')
Architecture: powerpc (ppc64)
Kernel: Linux 2.6.24-1-powerpc64 (SMP w/2 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash
Versions of packages clustalw depends on:
ii libc6 2.7-6 GNU C Library: Shared libraries
ii libgcc1 1:4.3.0-3 GCC support library
ii libstdc++6 4.3.0-3 The GNU Standard C++ Library v3
clustalw recommends no packages.
-- no debconf information
--- End Message ---
--- Begin Message ---
Fixed 476626 5.0.0-7
thanks
I shamefully forgot to document in debian/changelog that version 5.0.0-7
incorporates an upstream patch that fixes this bug.
http://svn.debian.org/wsvn/debian-med/trunk/packages/emboss/trunk/debian/patches/clustalw2-fix.patch?op=file&rev=0&sc=0
--
Charles
--- End Message ---
