Your message dated Tue, 15 Jul 2008 00:47:35 +0000
with message-id <[EMAIL PROTECTED]>
and subject line Bug#490437: fixed in ncbi-tools6 6.1.20080302-3
has caused the Debian Bug report #490437,
regarding ncbi-tools6: FTBFS on GNU/kFreeBSD (due to dpkg-gensymbols)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [EMAIL PROTECTED]
immediately.)
--
490437: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=490437
Debian Bug Tracking System
Contact [EMAIL PROTECTED] with problems
--- Begin Message ---
Package: ncbi-tools6
Severity: important
Version: 6.1.20080302-2
User: [EMAIL PROTECTED]
Usertags: kfreebsd
Hi,
the current version fails to build on GNU/kFreeBSD.
It seems that the madvise() and preload() interface
are available only on Linux, but a symbol file is common
for all architectures.
See http://buildd.debian-ports.org/build.php?arch=&pkg=ncbi-tools6
It might help to put into debian/rules something like
grep -v -e readdb_madvise -e readdb_preload libncbi6.symbols >
libncbi6.symbols.kfreebsd-i386
grep -v -e readdb_madvise -e readdb_preload libncbi6.symbols >
libncbi6.symbols.kfreebsd-amd64
Thanks in advance
Petr
--- End Message ---
--- Begin Message ---
Source: ncbi-tools6
Source-Version: 6.1.20080302-3
We believe that the bug you reported is fixed in the latest version of
ncbi-tools6, which is due to be installed in the Debian FTP archive:
blast2_2.2.18.20080302-3_amd64.deb
to pool/main/n/ncbi-tools6/blast2_2.2.18.20080302-3_amd64.deb
libncbi6-dbg_6.1.20080302-3_amd64.deb
to pool/main/n/ncbi-tools6/libncbi6-dbg_6.1.20080302-3_amd64.deb
libncbi6-dev_6.1.20080302-3_amd64.deb
to pool/main/n/ncbi-tools6/libncbi6-dev_6.1.20080302-3_amd64.deb
libncbi6_6.1.20080302-3_amd64.deb
to pool/main/n/ncbi-tools6/libncbi6_6.1.20080302-3_amd64.deb
libvibrant6-dev_6.1.20080302-3_amd64.deb
to pool/main/n/ncbi-tools6/libvibrant6-dev_6.1.20080302-3_amd64.deb
libvibrant6a-dbg_6.1.20080302-3_amd64.deb
to pool/main/n/ncbi-tools6/libvibrant6a-dbg_6.1.20080302-3_amd64.deb
libvibrant6a_6.1.20080302-3_amd64.deb
to pool/main/n/ncbi-tools6/libvibrant6a_6.1.20080302-3_amd64.deb
ncbi-data_6.1.20080302-3_all.deb
to pool/main/n/ncbi-tools6/ncbi-data_6.1.20080302-3_all.deb
ncbi-tools-bin_6.1.20080302-3_amd64.deb
to pool/main/n/ncbi-tools6/ncbi-tools-bin_6.1.20080302-3_amd64.deb
ncbi-tools-x11_6.1.20080302-3_amd64.deb
to pool/main/n/ncbi-tools6/ncbi-tools-x11_6.1.20080302-3_amd64.deb
ncbi-tools6_6.1.20080302-3.diff.gz
to pool/main/n/ncbi-tools6/ncbi-tools6_6.1.20080302-3.diff.gz
ncbi-tools6_6.1.20080302-3.dsc
to pool/main/n/ncbi-tools6/ncbi-tools6_6.1.20080302-3.dsc
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [EMAIL PROTECTED],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Aaron M. Ucko <[EMAIL PROTECTED]> (supplier of updated ncbi-tools6 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [EMAIL PROTECTED])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Mon, 14 Jul 2008 19:43:15 -0400
Source: ncbi-tools6
Binary: libncbi6 libncbi6-dev libncbi6-dbg ncbi-data ncbi-tools-bin
ncbi-tools-x11 blast2 libvibrant6a libvibrant6-dev libvibrant6a-dbg
Architecture: source amd64 all
Version: 6.1.20080302-3
Distribution: unstable
Urgency: high
Maintainer: Aaron M. Ucko <[EMAIL PROTECTED]>
Changed-By: Aaron M. Ucko <[EMAIL PROTECTED]>
Description:
blast2 - Basic Local Alignment Search Tool
libncbi6 - NCBI libraries for biology applications
libncbi6-dbg - NCBI libraries for biology applications (debugging symbols)
libncbi6-dev - NCBI libraries for biology applications (development files)
libvibrant6-dev - NCBI libraries for graphic biology applications (development
file
libvibrant6a - NCBI libraries for graphic biology applications
libvibrant6a-dbg - NCBI libraries for graphic biology applications (unstripped)
ncbi-data - Platform-independent data for the NCBI toolkit
ncbi-tools-bin - NCBI libraries for biology applications (text-based utilities)
ncbi-tools-x11 - NCBI libraries for biology applications (X-based utilities)
Closes: 490437
Changes:
ncbi-tools6 (6.1.20080302-3) unstable; urgency=high
.
* tools/readdb.c: enable madvise()-based code on all glibc (hence all
Debian) systems, not just Linux. (Closes: #490437.)
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