Your message dated Fri, 15 Aug 2008 16:36:21 -0500
with message-id <[EMAIL PROTECTED]>
and subject line Re: Bug#493859: r-base-dev: Fails to properly build .so files
for packages
has caused the Debian Bug report #493859,
regarding r-base-dev: Fails to properly build .so files for packages
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [EMAIL PROTECTED]
immediately.)
--
493859: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=493859
Debian Bug Tracking System
Contact [EMAIL PROTECTED] with problems
--- Begin Message ---
Package: r-base-dev
Version: 2.7.1-2
Severity: important
When installing an R package it fails to create the .so file. This
happens with my own packages, as well as any I download from CRAN, for
example I have the problem with MCMCpack:
% R CMD INSTALL -l ./lib MCMCpack
g++ -I/usr/share/R/include -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0
-DHAVE_TRUNC -fpic -g -O2 -c MCMCprobitres.cc -o MCMCprobitres.o
g++ -I/usr/share/R/include -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0
-DHAVE_TRUNC -fpic -g -O2 -c MCMCregress.cc -o MCMCregress.o
make: `MCMCSVDreg.o' is up to date.
g++ -I/usr/share/R/include -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0
-DHAVE_TRUNC -fpic -g -O2 -c MCMCtobit.cc -o MCMCtobit.o
cp: cannot stat `*.so': No such file or directory
chmod: cannot access `/tmp/lib/MCMCpack/libs/*': No such file or directory
ERROR: compilation failed for package 'MCMCpack'
** Removing '/tmp/lib/MCMCpack'
Note that it is missing the usual link line that would be something like:
g++ -shared -Wl,-O1 -o MCMCpack.so ...
I haven't changed any of the R configuration files, and it doesn't
even work on my R package's src directory when I leave out the
Makevars file altogether. Not sure if this is a problem with the
Debian version or an issue upstream.
-- System Information:
Debian Release: lenny/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: i386 (i686)
Kernel: Linux 2.6.25-2-686 (SMP w/2 CPU cores)
Locale: LANG=en_US.ISO-8859-15, LC_CTYPE=en_US.ISO-8859-15 (charmap=ISO-8859-15)
Shell: /bin/sh linked to /bin/bash
Versions of packages r-base-dev depends on:
ii build-essential 11.3 informational list of build-essent
ii dpatch 2.0.29 patch maintenance system for Debia
ii g++ 4:4.3.1-2 The GNU C++ compiler
ii gcc 4:4.3.1-2 The GNU C compiler
ii gfortran 4:4.3.1-2 The GNU Fortran 95 compiler
ii libblas-dev 1.2-2 Basic Linear Algebra Subroutines 3
ii libbz2-dev 1.0.5-0.1 high-quality block-sorting file co
ii libjpeg62-dev 6b-14 Development files for the IJG JPEG
ii liblapack-dev 3.1.1-1 library of linear algebra routines
ii libncurses5-dev 5.6+20080621-2 developer's libraries and docs for
ii libpcre3-dev 7.6-2 Perl 5 Compatible Regular Expressi
ii libpng12-dev 1.2.27-1 PNG library - development
ii libreadline5-dev 5.2-3 GNU readline and history libraries
ii r-base-core 2.7.1-2 GNU R core of statistical computin
ii zlib1g-dev 1:1.2.3.3.dfsg-12 compression library - development
r-base-dev recommends no packages.
Versions of packages r-base-dev suggests:
pn cdbs <none> (no description available)
ii debhelper 7.0.13 helper programs for debian/rules
-- no debconf information
--- End Message ---
--- Begin Message ---
Closing this bug report as there was no further follow-up from Aaron, the
submitter, so I have to conclude that it was more of a misunderstanding in
terms of how one should not build in the source directory.
Dirk
--
Three out of two people have difficulties with fractions.
--- End Message ---
