Your message dated Sat, 31 Jan 2009 23:09:09 +0100
with message-id <1233439749.5350.10.ca...@localhost>
and subject line pymol: Pymol does not recognize "biological entity" files from
wwwpdb.org
has caused the Debian Bug report #482535,
regarding pymol: Pymol does not recognize "biological entity" files from
wwwpdb.org
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
482535: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=482535
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: pymol
Version: 1.0r2-1
Severity: wishlist
Tags: patch
User: [email protected]
Usertags: origin-ubuntu hardy ubuntu-patch
In Ubuntu, we've applied the attached patch to achieve the following:
* Add debian/patches/13_add_pdb1_extension.dpatch:
Allow pymol to recognize the extension *.pdb1, which is
used by wwpdb.org to represent "biological entity" files.
Closes (LP: #234311).
We thought you might be interested in doing the same.
-- System Information:
Debian Release: lenny/sid
APT prefers hardy-updates
APT policy: (500, 'hardy-updates'), (500, 'hardy-security'), (500,
'hardy-proposed'), (500, 'hardy')
Architecture: amd64 (x86_64)
Kernel: Linux 2.6.24-16-generic (SMP w/4 CPU cores)
Locale: LANG=en_DK.UTF-8, LC_CTYPE=en_DK.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Cheers!
diff -u pymol-1.0r2/debian/patches/00list pymol-1.0r2/debian/patches/00list
--- pymol-1.0r2/debian/patches/00list
+++ pymol-1.0r2/debian/patches/00list
@@ -9,0 +10 @@
+13_add_pdb1_extension.dpatch
diff -u pymol-1.0r2/debian/changelog pymol-1.0r2/debian/changelog
only in patch2:
unchanged:
--- pymol-1.0r2.orig/debian/patches/13_add_pdb1_extension.dpatch
+++ pymol-1.0r2/debian/patches/13_add_pdb1_extension.dpatch
@@ -0,0 +1,19 @@
+#! /bin/sh /usr/share/dpatch/dpatch-run
+## 13_add_pdb1_extension.dpatch by Morten Kjeldgaard <[email protected]>
+##
+## DP: Allow pymol to recognize the extension *.pdb1, which is
+## DP: used by wwpdb.org to represent "biological entity" files.
+
+
+...@dpatch@
+diff -urNad pymol-1.0r2~/modules/pmg_tk/skins/normal/__init__.py
pymol-1.0r2/modules/pmg_tk/skins/normal/__init__.py
+--- pymol-1.0r2~/modules/pmg_tk/skins/normal/__init__.py 2007-06-21
20:17:14.000000000 +0200
++++ pymol-1.0r2/modules/pmg_tk/skins/normal/__init__.py 2008-05-23
14:36:13.000000000 +0200
+@@ -388,6 +388,7 @@
+ if not tutorial:
+ initdir = self.initialdir
+ ftypes = [("All Readable","*.pdb"),
++ ("All Readable","*.pdb1"),
+ ("All Readable","*.ccp4"),
+ ("All Readable","*.xplor"),
+ ("All Readable","*.mol"),
--- End Message ---
--- Begin Message ---
This will unlikely be fixed in Etch (if it exists there too) and Lenny
already has the fix. It is a minor issue. I'm therefor closing this
report. Please feel free to comment this decision and/reopen your
report.
Regards, Daniel
--- End Message ---
