Your message dated Sat, 03 Oct 2009 10:24:41 +0000
with message-id <[email protected]>
and subject line Bug#549268: fixed in pymol 1.2r1-2
has caused the Debian Bug report #549268,
regarding Fails to parse arguments to command-line options
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
549268: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=549268
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: pymol
Version: 1.2r1-1
Severity: normal
Hello,
When starting pymol with a geometry specification, such as the
following, pymol -W 1000, it fails miserably with the following error:
~ pymol -W 1000 sdf
Traceback (most recent call last):
File "/usr/lib/python2.5/runpy.py", line 95, in run_module
filename, loader, alter_sys)
File "/usr/lib/python2.5/runpy.py", line 52, in _run_module_code
mod_name, mod_fname, mod_loader)
File "/usr/lib/python2.5/runpy.py", line 32, in _run_code
exec code in run_globals
File "/usr/lib/pymodules/python2.5/pymol/__init__.py", line 489, in <module>
invocation.parse_args(pymol_argv)
File "/usr/lib/pymodules/python2.5/pymol/invocation.py", line 223, in
parse_args
options.internal_feedback = int(av.pop())
IndexError: pop from empty list
That sure did not happen with earlier versions ;-)...
Cheers,
Vincent
-- System Information:
Debian Release: squeeze/sid
APT prefers unstable
APT policy: (500, 'unstable'), (500, 'testing'), (500, 'stable'), (1,
'experimental')
Architecture: amd64 (x86_64)
Kernel: Linux 2.6.30-2-amd64 (SMP w/2 CPU cores)
Locale: LANG=en_GB, LC_CTYPE=en_GB (charmap=ISO-8859-1)
Shell: /bin/sh linked to /bin/dash
Versions of packages pymol depends on:
ii freeglut3 2.4.0-8 OpenGL Utility Toolkit
ii libc6 2.9-27 GNU C Library: Shared libraries
ii libfreetype6 2.3.9-5 FreeType 2 font engine, shared lib
ii libgcc1 1:4.4.1-4 GCC support library
ii libgl1-mesa-glx [libgl 7.6-1 A free implementation of the OpenG
ii libglu1-mesa [libglu1] 7.6-1 The OpenGL utility library (GLU)
ii libpng12-0 1.2.39-1 PNG library - runtime
ii libstdc++6 4.4.1-4 The GNU Standard C++ Library v3
ii python 2.5.4-2 An interactive high-level object-o
ii python-pmw 1.3.2-3 Pmw -- Python MegaWidgets
ii python-support 1.0.3 automated rebuilding support for P
ii python-tk 2.5.2-1.1 Tkinter - Writing Tk applications
ii zlib1g 1:1.2.3.3.dfsg-15 compression library - runtime
Versions of packages pymol recommends:
ii apbs 1.1.0-1 Adaptive Poisson Boltzmann Solver
pymol suggests no packages.
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: pymol
Source-Version: 1.2r1-2
We believe that the bug you reported is fixed in the latest version of
pymol, which is due to be installed in the Debian FTP archive:
pymol_1.2r1-2.diff.gz
to pool/main/p/pymol/pymol_1.2r1-2.diff.gz
pymol_1.2r1-2.dsc
to pool/main/p/pymol/pymol_1.2r1-2.dsc
pymol_1.2r1-2_i386.deb
to pool/main/p/pymol/pymol_1.2r1-2_i386.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Daniel Leidert (dale) <[email protected]> (supplier of updated pymol
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Sat, 03 Oct 2009 01:04:21 +0200
Source: pymol
Binary: pymol
Architecture: source i386
Version: 1.2r1-2
Distribution: unstable
Urgency: low
Maintainer: Debichem Team <[email protected]>
Changed-By: Daniel Leidert (dale) <[email protected]>
Description:
pymol - Molecular Graphics System
Closes: 547871 549268
Changes:
pymol (1.2r1-2) unstable; urgency=low
.
* debian/control (Build-Depends): Added python for python.mk.
* debian/pymol.launch.in: Replace $* with $@ and add a construct to replace
the test (closes: #549268).
* debian/rules: Include python.mk.
(install): Use --install-layout=deb via py_setup_install_args (closes:
#547871).
* debian/patches/02_test-suite.dpatch: Adjusted.
- test/pymol-test: Include /usr/lib/pythonX.Y/dist-packages too.
* debian/patches/20_output_license_terms.dpatch: Added.
- Show the Debian package copyright file when using 'Output License
Terms', which fully reproduces the LICENSE file.
* debian/patches/00list: Adjusted.
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Files:
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4625823e64bfbfce3db0e43cc5e3cea5 21979 science optional pymol_1.2r1-2.diff.gz
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