Your message dated Tue, 11 May 2010 22:17:55 +0000
with message-id <[email protected]>
and subject line Bug#579990: fixed in atlas 3.8.3-22
has caused the Debian Bug report #579990,
regarding custom atlas build fails
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact [email protected]
immediately.)
--
579990: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=579990
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: atlas
Version: 3.8.3-21
Hi
The cpufrequtils test loop that is part of the 'custom' rule fails due
to the bash-tastic for-loop syntax. I have replaced it with a while
loop in the attached patch. I've tested it and it works fine.
A less important 'gotcha' is that running the custom rule means that
build dependency checks are bypassed. If the uninstalled dependency is
say lapack-dev, then a 20+ minute compile is a long time to waitto
discover it is borked. (I am sighing from personal experience).
The following test works ($$deps would be the list of build-dep
packages). I am, however, unsure how one would get $$deps from within
the rules makefile.
if test -n "$$(dpkg-query -W $$deps 2>&1 > /dev/null)"; then\
echo "build dependencies are not fully installed";\
echo "aborting";\
exit 1;\
fi
--- debian/rules 2010-05-03 09:02:33.624063782 +1200
+++ debian/rules.edit 2010-05-03 09:00:41.570399790 +1200
@@ -110,14 +110,17 @@
custom-stamp:
rm -f configure-stamp
- ncpu=$$(LANG=C cpufreq-info | grep "analyzing CPU" -c); \
- for (( cpu=0 ; cpu < $$ncpu ; cpu++)); do \
- if test $$(cpufreq-info -p 2>&1 > /dev/null; echo $$?) -eq 0 -a -z "$$(LANG=C cpufreq-info -p -c $$cpu | grep performance)" ; then \
- echo "frequency governor on cpu=$$cpu is not set to 'performance'"; \
+ ncpu=$$(LANG=C cpufreq-info | grep "analyzing CPU" -c);\
+ cpu=0;\
+ while test $$cpu -lt $$ncpu ; do\
+ if test $$(cpufreq-info -p 2>&1 > /dev/null; echo $$?) \
+ -eq 0 -a -z "$$(LANG=C cpufreq-info -p -c $$cpu | grep performance)" ; then \
+ echo "frequency governor on cpu=$$ncpu is not set to 'performance'"; \
echo "run: 'sudo cpufreq-set -g performance -c cpu#' for each cpu"; \
echo "aborting atlas build"; \
exit 1; \
fi; \
+ cpu=$$((cpu+1)) ;\
done
# Here, the trick is pretty simple:
--- End Message ---
--- Begin Message ---
Source: atlas
Source-Version: 3.8.3-22
We believe that the bug you reported is fixed in the latest version of
atlas, which is due to be installed in the Debian FTP archive:
atlas_3.8.3-22.diff.gz
to main/a/atlas/atlas_3.8.3-22.diff.gz
atlas_3.8.3-22.dsc
to main/a/atlas/atlas_3.8.3-22.dsc
libatlas-base-dev_3.8.3-22_i386.deb
to main/a/atlas/libatlas-base-dev_3.8.3-22_i386.deb
libatlas-core2sse3-dev_3.8.3-22_i386.deb
to main/a/atlas/libatlas-core2sse3-dev_3.8.3-22_i386.deb
libatlas-dev_3.8.3-22_all.deb
to main/a/atlas/libatlas-dev_3.8.3-22_all.deb
libatlas-doc_3.8.3-22_all.deb
to main/a/atlas/libatlas-doc_3.8.3-22_all.deb
libatlas-sse-dev_3.8.3-22_i386.deb
to main/a/atlas/libatlas-sse-dev_3.8.3-22_i386.deb
libatlas-sse2-dev_3.8.3-22_i386.deb
to main/a/atlas/libatlas-sse2-dev_3.8.3-22_i386.deb
libatlas-sse3-dev_3.8.3-22_i386.deb
to main/a/atlas/libatlas-sse3-dev_3.8.3-22_i386.deb
libatlas-test_3.8.3-22_i386.deb
to main/a/atlas/libatlas-test_3.8.3-22_i386.deb
libatlas3gf-base_3.8.3-22_i386.deb
to main/a/atlas/libatlas3gf-base_3.8.3-22_i386.deb
libatlas3gf-core2sse3_3.8.3-22_i386.deb
to main/a/atlas/libatlas3gf-core2sse3_3.8.3-22_i386.deb
libatlas3gf-sse2_3.8.3-22_i386.deb
to main/a/atlas/libatlas3gf-sse2_3.8.3-22_i386.deb
libatlas3gf-sse3_3.8.3-22_i386.deb
to main/a/atlas/libatlas3gf-sse3_3.8.3-22_i386.deb
libatlas3gf-sse_3.8.3-22_i386.deb
to main/a/atlas/libatlas3gf-sse_3.8.3-22_i386.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sylvestre Ledru <[email protected]> (supplier of updated atlas package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Tue, 11 May 2010 11:39:10 +0200
Source: atlas
Binary: libatlas3gf-base libatlas-base-dev libatlas-dev libatlas-test
libatlas-doc libatlas3gf-sse libatlas-sse-dev libatlas3gf-sse2
libatlas-sse2-dev libatlas3gf-sse3 libatlas-sse3-dev libatlas3gf-core2sse3
libatlas-core2sse3-dev libatlas3gf-amd64sse3 libatlas-amd64sse3-dev
libatlas3gf-corei7sse3 libatlas-corei7sse3-dev libatlas3gf-altivec
libatlas-altivec-dev libatlas3gf-v9 libatlas-v9-dev libatlas3gf-ev6
libatlas-ev6-dev libatlas3gf-2.0 libatlas-2.0-dev
Architecture: source all i386
Version: 3.8.3-22
Distribution: unstable
Urgency: low
Maintainer: Debian Scientific Computing Team
<[email protected]>
Changed-By: Sylvestre Ledru <[email protected]>
Description:
libatlas-2.0-dev - Automatically Tuned Linear Algebra Software, 2.0 static
libatlas-altivec-dev - Automatically Tuned Linear Algebra Software, altivec
static
libatlas-amd64sse3-dev - Automatically Tuned Linear Algebra Software,
AMD64SSE3 static
libatlas-base-dev - Automatically Tuned Linear Algebra Software, generic static
libatlas-core2sse3-dev - Automatically Tuned Linear Algebra Software,
CORE2SSE3 static
libatlas-corei7sse3-dev - Automatically Tuned Linear Algebra Software,
COREI7SSE3 static
libatlas-dev - Automatically Tuned Linear Algebra Software, C header files
libatlas-doc - Automatically Tuned Linear Algebra Software, documentation
libatlas-ev6-dev - Automatically Tuned Linear Algebra Software, EV6 static
libatlas-sse-dev - Automatically Tuned Linear Algebra Software, SSE1 static
libatlas-sse2-dev - Automatically Tuned Linear Algebra Software, SSE2 static
libatlas-sse3-dev - Automatically Tuned Linear Algebra Software, SSE3 static
libatlas-test - Automatically Tuned Linear Algebra Software, test programs
libatlas-v9-dev - Automatically Tuned Linear Algebra Software, v9 static
libatlas3gf-2.0 - Automatically Tuned Linear Algebra Software, 2.0 shared
libatlas3gf-altivec - Automatically Tuned Linear Algebra Software, altivec
shared
libatlas3gf-amd64sse3 - Automatically Tuned Linear Algebra Software, AMD64SSE3
shared
libatlas3gf-base - Automatically Tuned Linear Algebra Software, generic shared
libatlas3gf-core2sse3 - Automatically Tuned Linear Algebra Software, CORE2SSE3
shared
libatlas3gf-corei7sse3 - Automatically Tuned Linear Algebra Software,
COREI7SSE3 shared
libatlas3gf-ev6 - Automatically Tuned Linear Algebra Software, EV6 shared
libatlas3gf-sse - Automatically Tuned Linear Algebra Software, SSE1 shared
libatlas3gf-sse2 - Automatically Tuned Linear Algebra Software, SSE2 shared
libatlas3gf-sse3 - Automatically Tuned Linear Algebra Software, SSE3 shared
libatlas3gf-v9 - Automatically Tuned Linear Algebra Software, v9 shared
Closes: 576987 579990
Changes:
atlas (3.8.3-22) unstable; urgency=low
.
* sse3 & core2sse3 packages removed for hurd
* Fix a build issue under mips & mipsel (patch 21_mips2.diff)
* Fix a custom build issue. Thanks to Adrian Benson for the patch
(Closes: #576987, #579990)
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libatlas3gf-core2sse3_3.8.3-22_i386.deb
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libatlas-core2sse3-dev_3.8.3-22_i386.deb
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libatlas-dev_3.8.3-22_all.deb
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libatlas-doc_3.8.3-22_all.deb
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libatlas-dev_3.8.3-22_all.deb
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libatlas-doc_3.8.3-22_all.deb
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libatlas-test_3.8.3-22_i386.deb
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libatlas3gf-sse_3.8.3-22_i386.deb
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libatlas3gf-core2sse3_3.8.3-22_i386.deb
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