Your message dated Wed, 12 May 2010 10:04:39 +0000
with message-id <[email protected]>
and subject line Bug#576210: fixed in pymol 1.2r2-1.1
has caused the Debian Bug report #576210,
regarding pymol: FBTFS on ia64: internal compiler error: in
insert_in_history_vect, at sel-sched-ir.c:1514
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
576210: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=576210
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: pymol
Version: 1.2r2-1
Severity: serious
Tags: patch
Justification: FTBFS on ia64
Hello,
Because of a bug in gcc (#576198), your package FTBFS on ia64:
https://buildd.debian.org/fetch.cgi?pkg=pymol&arch=ia64&ver=1.2r2-1&stamp=1268143067&file=log
The attached patch reduces optimization level from -O3 to -O2 on ia64,
allowing the package to be built successfully.
--
Jakub Wilk
--- pymol-1.2r2.orig/setup.py
+++ pymol-1.2r2/setup.py
@@ -146,6 +146,9 @@
# ("_PYMOL_VMD_PLUGINS",None)
]
ext_comp_args=["-ffast-math","-funroll-loops","-O3"]
+ if os.uname()[-1] == 'ia64':
+ # Mitigate bug #576198:
+ del ext_comp_args[-1]
ext_link_args=[]
setup ( # Distribution meta-data
signature.asc
Description: Digital signature
--- End Message ---
--- Begin Message ---
Source: pymol
Source-Version: 1.2r2-1.1
We believe that the bug you reported is fixed in the latest version of
pymol, which is due to be installed in the Debian FTP archive:
pymol_1.2r2-1.1.diff.gz
to main/p/pymol/pymol_1.2r2-1.1.diff.gz
pymol_1.2r2-1.1.dsc
to main/p/pymol/pymol_1.2r2-1.1.dsc
pymol_1.2r2-1.1_amd64.deb
to main/p/pymol/pymol_1.2r2-1.1_amd64.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sandro Tosi <[email protected]> (supplier of updated pymol package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Mon, 10 May 2010 09:34:51 +0200
Source: pymol
Binary: pymol
Architecture: source amd64
Version: 1.2r2-1.1
Distribution: unstable
Urgency: low
Maintainer: Debichem Team <[email protected]>
Changed-By: Sandro Tosi <[email protected]>
Description:
pymol - Molecular Graphics System
Closes: 576210
Changes:
pymol (1.2r2-1.1) unstable; urgency=low
.
* Non-maintainer upload.
* debian/patches/23_bts576210_FTBFS_ia64.dpatch
- fix a FTBFS on ia64, working aroung a bug in GCC; thanks to Jakub Wilk
for
the report and patch; Closes: #576210
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