Your message dated Wed, 28 Jul 2010 15:17:24 +0000
with message-id <[email protected]>
and subject line Bug#590553: fixed in emboss 6.3.1-3
has caused the Debian Bug report #590553,
regarding emboss: FTBFS on GNU/kFreeBSD and hppa (due to unsatisfied
Build-Depends on openjdk-6-jdk)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
590553: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=590553
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: emboss
Version: 6.3.1-2
Severity: serious
Tags: patch
User: [email protected]
Usertags: kfreebsd
Hi,
the emboss doesn't build on kfreebsd-i386, kfreebsd-amd64 and hppa anymore.
The problem is:
emboss (6.3.1-2) unstable; urgency=low
* Moved openjdk-6-jdk to Build-Depends
Please use default-jdk instead of openjdk-6-jdk
and default-jre instead of openjdk-6-jre, see diffs bellow.
These packages provide default java implementation,
on avr32, hppa, hurd-i386, kfreebsd-amd64, kfreebsd-i386, m68k
it is gcj and on the rest it is openjdk-6.
Thanks
Petr
--- debian/rules
+++ debian/rules
@@ -15,13 +15,8 @@
CONFFLAGS += --bindir=/usr/lib/emboss
CONFFLAGS += --enable-systemlibs
-# If openjdk-6-jdk is not installed don't tell configure to use it.
-# This allows binary-arch builds to be performed without openjdk
-# installed.
-ifneq ($(wildcard /usr/lib/jvm/java-6-openjdk/include/classfile_constants.h),)
- CONFFLAGS += --with-java=/usr/lib/jvm/java-6-openjdk/include
- CONFFLAGS += --with-javaos=/usr/lib/jvm/java-6-openjdk/include/linux
-endif
+CONFFLAGS += --with-java=/usr/lib/jvm/default-java/include
+CONFFLAGS += --with-javaos=/usr/lib/jvm/default-java/include/linux
DEB_LDFLAGS += -lexpat
DEB_LDFLAGS += $(shell mysql_config --libs)
--- debian/control
+++ debian/control
@@ -6,8 +6,8 @@
Uploaders: Charles Plessy <[email protected]>, Nelson A. de Oliveira
<[email protected]>
Build-Depends: debhelper (>= 7), quilt, libx11-dev, x11proto-core-dev,
libgdchart-gd2-xpm-dev, zlib1g-dev, libpng12-dev, libpcre3-dev, libexpat1-dev,
libmysqlclient-dev, libpq-dev, antiword, sharutils, autotools-dev, tcsh | csh |
c-shell,
# Needed until the following is solved:
https://sourceforge.net/tracker/?func=detail&aid=3033326&group_id=93650&atid=605031
- openjdk-6-jdk
-#Build-Depends-Indep: openjdk-6-jdk
+ default-jdk
+#Build-Depends-Indep: default-jdk
Vcs-Browser: http://git.debian.org/?p=debian-med/emboss.git
Vcs-Git: git://git.debian.org/git/debian-med/emboss.git
Standards-Version: 3.9.0
@@ -68,7 +68,7 @@
Package: jemboss
Architecture: all
-Depends: ${shlibs:Depends}, ${misc:Depends}, openjdk-6-jre, tcsh | csh |
c-shell
+Depends: ${shlibs:Depends}, ${misc:Depends}, default-jre, tcsh | csh | c-shell
Description: graphical user interface to EMBOSS
Jemboss is a Graphical User Interface (GUI) to EMBOSS, the European Molecular
Biology Open Software Suite. It is part of the EMBOSS distribution.
--- End Message ---
--- Begin Message ---
Source: emboss
Source-Version: 6.3.1-3
We believe that the bug you reported is fixed in the latest version of
emboss, which is due to be installed in the Debian FTP archive:
emboss-data_6.3.1-3_all.deb
to main/e/emboss/emboss-data_6.3.1-3_all.deb
emboss-doc_6.3.1-3_all.deb
to main/e/emboss/emboss-doc_6.3.1-3_all.deb
emboss-test_6.3.1-3_all.deb
to main/e/emboss/emboss-test_6.3.1-3_all.deb
emboss_6.3.1-3.diff.gz
to main/e/emboss/emboss_6.3.1-3.diff.gz
emboss_6.3.1-3.dsc
to main/e/emboss/emboss_6.3.1-3.dsc
jemboss_6.3.1-3_all.deb
to main/e/emboss/jemboss_6.3.1-3_all.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <[email protected]> (supplier of updated emboss package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Wed, 28 Jul 2010 23:42:31 +0900
Source: emboss
Binary: emboss emboss-data emboss-doc emboss-test emboss-lib jemboss libajax6
libajax6-dev libnucleus6 libnucleus6-dev
Architecture: source all
Version: 6.3.1-3
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Charles Plessy <[email protected]>
Description:
emboss-data - data files for the EMBOSS package
emboss-doc - documentation for EMBOSS
emboss-test - test files for the EMBOSS package
jemboss - graphical user interface to EMBOSS
Closes: 590553
Changes:
emboss (6.3.1-3) unstable; urgency=low
.
* Use default Java instead of OpenJDK (debian/control, debian/rules,
closes: #590553, thanks to Petr Salinger).
* Incremented Standards-Version in debian/control to reflect conformance
with Debian Policy 3.9.1 (no changes needed).
Checksums-Sha1:
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951018299db2247745a2452ddf9cae571474f5fe 295815 emboss_6.3.1-3.diff.gz
a8392a78171ca324e1668956dd7d565c56678133 870670 emboss-data_6.3.1-3_all.deb
96ab7e762db8b2b8bb3fb2a4267c78b13105083e 5443642 emboss-doc_6.3.1-3_all.deb
c94c5826890cb2a4f2f7a498e3fb8d0f2aaf83e5 5848884 emboss-test_6.3.1-3_all.deb
79fbc81f9e0184ac2e24e2deb4c76573fda2e918 4104072 jemboss_6.3.1-3_all.deb
Checksums-Sha256:
32c4ce0e89032fecd1dc6897e3047918934e7c4030f39b05a8b990652593bf82 1585
emboss_6.3.1-3.dsc
a5645467a0e11cbe6a114bf593a9a235938acc3c42a431276845700e7e567d80 295815
emboss_6.3.1-3.diff.gz
041176fb02507ccae3551ecda0e841b34a7a69e4210a8f5061733ce50d0b2a4e 870670
emboss-data_6.3.1-3_all.deb
cd87106082b3fa239ac94f13284c0a08d6449250a0fcb212e4ef640a83e6b9e5 5443642
emboss-doc_6.3.1-3_all.deb
76ca189b1ad07f0a6df0c7a731cabe54793b80638eb8290468b5f98f2bbc39b9 5848884
emboss-test_6.3.1-3_all.deb
acd9302548cc48d4421b551b5003a706bd871ed2461bfba34203dad959677b99 4104072
jemboss_6.3.1-3_all.deb
Files:
e558a2eccc54656606dedeef9eb07b22 1585 science optional emboss_6.3.1-3.dsc
60b13d575d85555b98002eb885a71893 295815 science optional emboss_6.3.1-3.diff.gz
ef630e0f6e3c4b8d8729e737d0c46d63 870670 science optional
emboss-data_6.3.1-3_all.deb
2a77fd22ee0e5de7e1a196fb449ddc96 5443642 doc optional
emboss-doc_6.3.1-3_all.deb
62b4fcdcafd7579c33ad60c6a12ec019 5848884 misc optional
emboss-test_6.3.1-3_all.deb
f056ca6fc1201d1c0c467f79bc2aa19f 4104072 science optional
jemboss_6.3.1-3_all.deb
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