Your message dated Sat, 13 Nov 2010 21:02:59 +0000
with message-id <[email protected]>
and subject line Bug#603327: fixed in gromacs 4.5.3-1
has caused the Debian Bug report #603327,
regarding gromacs: ngmx binary is missing
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)


-- 
603327: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=603327
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Subject: gromacs: ngmx binary is missing
Package: gromacs
Version: 4.5.2-1
Severity: normal

The ngmx (Gromacs trajectory viewer) binary is missing in the package.



-- System Information:
Debian Release: squeeze/sid
  APT prefers unstable
  APT policy: (990, 'unstable'), (500, 'testing'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 2.6.32-5-amd64 (SMP w/2 CPU cores)
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

Versions of packages gromacs depends on:
ii  gromacs-data                 4.5.2-1     GROMACS molecular dynamics sim, da
ii  libc6                        2.11.2-7    Embedded GNU C Library: Shared lib
ii  libfftw3-3                   3.2.2-1     library for computing Fast Fourier
ii  libgsl0ldbl                  1.14+dfsg-1 GNU Scientific Library (GSL) -- li
ii  libice6                      2:1.0.6-2   X11 Inter-Client Exchange library
ii  libsm6                       2:1.2.0-1   X11 Session Management library
ii  libx11-6                     2:1.3.3-3   X11 client-side library

Versions of packages gromacs recommends:
ii  cpp                           4:4.4.5-1  The GNU C preprocessor (cpp)

gromacs suggests no packages.



--- End Message ---
--- Begin Message ---
Source: gromacs
Source-Version: 4.5.3-1

We believe that the bug you reported is fixed in the latest version of
gromacs, which is due to be installed in the Debian FTP archive:

gromacs-data_4.5.3-1_all.deb
  to main/g/gromacs/gromacs-data_4.5.3-1_all.deb
gromacs-dev_4.5.3-1_i386.deb
  to main/g/gromacs/gromacs-dev_4.5.3-1_i386.deb
gromacs-lam_4.5.3-1_i386.deb
  to main/g/gromacs/gromacs-lam_4.5.3-1_i386.deb
gromacs-mpich_4.5.3-1_i386.deb
  to main/g/gromacs/gromacs-mpich_4.5.3-1_i386.deb
gromacs-openmpi_4.5.3-1_i386.deb
  to main/g/gromacs/gromacs-openmpi_4.5.3-1_i386.deb
gromacs_4.5.3-1.diff.gz
  to main/g/gromacs/gromacs_4.5.3-1.diff.gz
gromacs_4.5.3-1.dsc
  to main/g/gromacs/gromacs_4.5.3-1.dsc
gromacs_4.5.3-1_i386.deb
  to main/g/gromacs/gromacs_4.5.3-1_i386.deb
gromacs_4.5.3.orig.tar.gz
  to main/g/gromacs/gromacs_4.5.3.orig.tar.gz



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Nicholas Breen <[email protected]> (supplier of updated gromacs package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Sat, 13 Nov 2010 12:02:17 -0800
Source: gromacs
Binary: gromacs gromacs-data gromacs-dev gromacs-mpich gromacs-lam 
gromacs-openmpi
Architecture: source all i386
Version: 4.5.3-1
Distribution: unstable
Urgency: low
Maintainer: Debichem Team <[email protected]>
Changed-By: Nicholas Breen <[email protected]>
Description: 
 gromacs    - Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - GROMACS molecular dynamics sim, development kit
 gromacs-lam - Transition package to gromacs-openmpi
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
Closes: 603327
Changes: 
 gromacs (4.5.3-1) unstable; urgency=low
 .
   * New upstream release.
   * Force -DGMX_X11=ON to build ngmx.  (Closes: #603327)
Checksums-Sha1: 
 c167ada9548d660d7a874b35bdb594a765b7c2f7 2181 gromacs_4.5.3-1.dsc
 c4845e5e62d1f53ee443301dad00138feba6d275 10338471 gromacs_4.5.3.orig.tar.gz
 5bfc343a6a878324d3306b5df3a0a146b384d739 27725 gromacs_4.5.3-1.diff.gz
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 bd2c44200d2b171f461cdd93b9d560cca06d5524 5350512 gromacs_4.5.3-1_i386.deb
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 07d3732a3fb93aa2957474ccee7804785077b9d7 3517438 
gromacs-openmpi_4.5.3-1_i386.deb
Checksums-Sha256: 
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gromacs_4.5.3-1.dsc
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gromacs_4.5.3.orig.tar.gz
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gromacs_4.5.3-1.diff.gz
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gromacs_4.5.3-1_i386.deb
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gromacs-dev_4.5.3-1_i386.deb
 d4741601a2dcc057f6a8e7e39fe85d2ac54500570abca974ac842be678c2c9fc 3515614 
gromacs-mpich_4.5.3-1_i386.deb
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gromacs-lam_4.5.3-1_i386.deb
 5d0dcac4873ffb1e6453f45bdf42646a80436e6a3b6d48938e5ab265d0365a00 3517438 
gromacs-openmpi_4.5.3-1_i386.deb
Files: 
 ec172031cea5aa4a5dcb1f372b5ae9ce 2181 science extra gromacs_4.5.3-1.dsc
 d5911585cd0e0b996dbbdcfb4c3bcf6b 10338471 science extra 
gromacs_4.5.3.orig.tar.gz
 fc09f402ad1d78f3241653d0e687d567 27725 science extra gromacs_4.5.3-1.diff.gz
 201f152f7f282c0d1d99fe0f126cfc37 1836718 science extra 
gromacs-data_4.5.3-1_all.deb
 9ca6fb3b3082254ac229c5816df32ed1 5350512 science extra gromacs_4.5.3-1_i386.deb
 512ce2a39d083f0b9850c5052a157641 290630 devel extra 
gromacs-dev_4.5.3-1_i386.deb
 8c80dd34e316a969ad2bd5bc3e019b0c 3515614 science extra 
gromacs-mpich_4.5.3-1_i386.deb
 f61909526f83e56c03f04bf5740da8c0 11172 science extra 
gromacs-lam_4.5.3-1_i386.deb
 ca8bbd04f6f51642c5e5d811d67e1714 3517438 science extra 
gromacs-openmpi_4.5.3-1_i386.deb

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--- End Message ---

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