Your message dated Sun, 20 Mar 2011 22:16:34 +0000
with message-id <[email protected]>
and subject line Bug#605962: fixed in gmsh 2.5.0.dfsg-3
has caused the Debian Bug report #605962,
regarding gmsh should depend on mpi-default-bin
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
605962: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=605962
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: gmsh
Version: 2.5.0.dfsg-2
Severity: normal
Hi,
While running gmsh recently on my laptop, I noticed that it now requires MPI.
The following MPI error message show a slight packing glitch.
<error>
$ gmsh --version
[t43:08798] [[INVALID],INVALID] ORTE_ERROR_LOG: A system-required executable
either could not be found or was not executable by this user in file
../../../../../../orte/mca/ess/singleton/ess_singleton_module.c at line 269
[t43:08798] [[INVALID],INVALID] ORTE_ERROR_LOG: A system-required executable
either could not be found or was not executable by this user in file
../../../../../../orte/mca/ess/singleton/ess_singleton_module.c at line 143
[t43:08798] [[INVALID],INVALID] ORTE_ERROR_LOG: A system-required executable
either could not be found or was not executable by this user in file
../../../orte/runtime/orte_init.c at line 132
--------------------------------------------------------------------------
It looks like orte_init failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during orte_init; some of which are due to configuration or
environment problems. This failure appears to be an internal failure;
here's some additional information (which may only be relevant to an
Open MPI developer):
orte_ess_set_name failed
--> Returned value A system-required executable either could not be found or
was not executable by this user (-127) instead of ORTE_SUCCESS
--------------------------------------------------------------------------
--------------------------------------------------------------------------
It looks like MPI_INIT failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during MPI_INIT; some of which are due to configuration or environment
problems. This failure appears to be an internal failure; here's some
additional information (which may only be relevant to an Open MPI
developer):
ompi_mpi_init: orte_init failed
--> Returned "A system-required executable either could not be found or was
not executable by this user" (-127) instead of "Success" (0)
--------------------------------------------------------------------------
*** The MPI_Init() function was called before MPI_INIT was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[t43:8798] Abort before MPI_INIT completed successfully; not able to guarantee
that all other processes were killed!
</error>
Installing mpi-default-bin which gmsh recommends fixed the problem.
Regards,
ST
-- System Information:
Debian Release: squeeze/sid
APT prefers unstable
APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: i386 (i686)
Kernel: Linux 2.6.36-trunk-686 (SMP w/1 CPU core)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash
Versions of packages gmsh depends on:
ii dpkg 1.15.8.6 Debian package management system
ii install-info 4.13a.dfsg.1-6 Manage installed documentation in
ii libatlas3gf-sse2 [libla 3.8.3-24 Automatically Tuned Linear Algebra
ii libblas3gf [libblas.so. 1.2-8 Basic Linear Algebra Reference imp
ii libc6 2.11.2-7 Embedded GNU C Library: Shared lib
ii libcgns2 2.5.4-3 CFD General Notation System librar
ii libfltk1.1 1.1.10-2+b1 Fast Light Toolkit - shared librar
ii libgcc1 1:4.4.5-10 GCC support library
ii libgfortran3 4.4.5-10 Runtime library for GNU Fortran ap
ii libgl1-mesa-glx [libgl1 7.7.1-4 A free implementation of the OpenG
ii libglu1-mesa [libglu1] 7.7.1-4 The OpenGL utility library (GLU)
ii libgomp1 4.4.5-10 GCC OpenMP (GOMP) support library
ii libjpeg62 6b1-1 The Independent JPEG Group's JPEG
ii liblapack3gf [liblapack 3.2.2-1.2 library of linear algebra routines
ii libopencascade-foundati 6.3.0.dfsg.1-6 OpenCASCADE CAE platform shared li
ii libopencascade-modeling 6.3.0.dfsg.1-6 OpenCASCADE CAE platform shared li
ii libopenmpi1.3 1.4.2-4 high performance message passing l
ii libpng12-0 1.2.44-1 PNG library - runtime
ii libscotch-5.1 5.1.8a.dfsg-2 programs and libraries for graph,
ii libstdc++6 4.4.5-10 The GNU Standard C++ Library v3
ii libx11-6 2:1.3.3-4 X11 client-side library
ii zlib1g 1:1.2.3.4.dfsg-3 compression library - runtime
Versions of packages gmsh recommends:
ii mpi-default-bin 0.6 Standard MPI runtime programs
gmsh suggests no packages.
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: gmsh
Source-Version: 2.5.0.dfsg-3
We believe that the bug you reported is fixed in the latest version of
gmsh, which is due to be installed in the Debian FTP archive:
gmsh_2.5.0.dfsg-3.debian.tar.gz
to main/g/gmsh/gmsh_2.5.0.dfsg-3.debian.tar.gz
gmsh_2.5.0.dfsg-3.dsc
to main/g/gmsh/gmsh_2.5.0.dfsg-3.dsc
gmsh_2.5.0.dfsg-3_amd64.deb
to main/g/gmsh/gmsh_2.5.0.dfsg-3_amd64.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Anton Gladky <[email protected]> (supplier of updated gmsh package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Sat, 19 Mar 2011 09:52:13 +0100
Source: gmsh
Binary: gmsh
Architecture: source amd64
Version: 2.5.0.dfsg-3
Distribution: unstable
Urgency: low
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Anton Gladky <[email protected]>
Description:
gmsh - Three-dimensional finite element mesh generator
Closes: 605962 618541
Changes:
gmsh (2.5.0.dfsg-3) unstable; urgency=low
.
* Switch to dpkg-source 3.0 (quilt) format
* debian/copyright has been changed to machine-readable DEP-5 format
* Old unused patches are removed
* Updated license information, now GPL-2+ instead of GPL-2:
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=617931#10
* Move mpi-default-bin from "Recommends" to "Depends". Closes: #605962
* sensible-editor and sensible-browser are used. Closes: #618541
* Fix spelling errors, fix-spelling-errors.patch
Checksums-Sha1:
ee82cfbf394bc5a45dc5e4eda131e9de20109eb2 1651 gmsh_2.5.0.dfsg-3.dsc
98b946dbb0f55e1dac90a3c8efd1d535a0729d2a 14628 gmsh_2.5.0.dfsg-3.debian.tar.gz
ee369f2b0db0b463d051c9f9303ea821762993e9 13861732 gmsh_2.5.0.dfsg-3_amd64.deb
Checksums-Sha256:
5ba6789454ae7409eca644b913c974e2b2415dbc97f1fb88aaf2009e00c825fc 1651
gmsh_2.5.0.dfsg-3.dsc
5b3858961834b62b322eb07c16f95c4035b063623f35ee6a658a1e3788babfdb 14628
gmsh_2.5.0.dfsg-3.debian.tar.gz
757ebbc81847bed971be161e73fc438e0b1ebe41f206aefddf1c14696c864552 13861732
gmsh_2.5.0.dfsg-3_amd64.deb
Files:
072e3218db0d5a5de70de1363f7a5f99 1651 math optional gmsh_2.5.0.dfsg-3.dsc
aa23413feae1ea0057799dae0e3dd952 14628 math optional
gmsh_2.5.0.dfsg-3.debian.tar.gz
46ff41a26dfd019c5fd94fb803e8354d 13861732 math optional
gmsh_2.5.0.dfsg-3_amd64.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.11 (GNU/Linux)
iEYEARECAAYFAk2F68sACgkQiOXXM92JlhBhhgCgxChYk+9tTgio02wBcNNEQywR
5bUAn0AGf3nB0J/QGzD+JRA1J7RPp11U
=vRXa
-----END PGP SIGNATURE-----
--- End Message ---
