Your message dated Fri, 29 Apr 2011 03:17:53 +0000
with message-id <[email protected]>
and subject line Bug#615774: fixed in slepc 3.1-p6.dfsg-1
has caused the Debian Bug report #615774,
regarding slepc: ftbfs with gold or ld --no-add-needed
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
615774: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=615774
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: slepc
Version: 3.0.0-p7.dfsg-7.1
Severity: important
Tags: sid
User: [email protected]
Usertags: no-add-needed
The package fails to build in a test rebuild on at least amd64 with
ld --no-add-needed. For details, please see:
http://lists.debian.org/debian-devel-announce/2011/02/msg00011.html
http://wiki.debian.org/ToolChain/DSOLinking
Ubuntu might have a patch for this issue, but unfortunately it was
not forwarded to Debian. Please have a look at
http://packages.qa.debian.org/slepc to see if an Ubuntu version for
this package exists, and if a fix is included in the Ubuntu diff.
[...]
================================================================================
Checking PETSc installation...
WARNING: PETSc version 3.1.0 is newer than SLEPc version
#include "petscksp.h"
EXTERN_C_BEGIN
EXTERN_C_END
int main() {
PetscInitialize(PETSC_NULL,PETSC_NULL,PETSC_NULL,PETSC_NULL);
VecCreate(PETSC_NULL,PETSC_NULL);
MatCreate(PETSC_NULL,PETSC_NULL);
KSPCreate(PETSC_NULL,PETSC_NULL);
return 0;
}
make[1]: Entering directory
`/build/user-slepc_3.0.0-p7.dfsg-7.1-amd64-CoLS9k/slepc-3.0.0-p7.dfsg/config'
mpicxx -o checklink.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -g -g -O2
-I/usr/lib/petsc/linux-gnu-c-debug/include -I/usr/lib/petsc/include
-I/usr/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib
-I/usr/include/spooles -I/usr/include/scotch -I/usr/lib
-I/usr/include/suitesparse -I/usr/include/petsc -D__INSDIR__= checklink.c
mpicxx -Wall -Wwrite-strings -Wno-strict-aliasing -g -o checklink checklink.o
-L/usr/lib/petsc/linux-gnu-c-debug/lib -L/usr/lib/petsc/linux-gnu-c-debug/lib
-lpetsc -lX11 -L/usr/lib -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common
-lpord -lscalapack-openmpi -lblacs-openmpi -lblacsCinit-openmpi -lspooles
-lHYPRE -lscotch -lhdf5_fortran -lhdf5 -lz -lumfpack -lamd -llapack -lblas
-L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5 -ldl -lmpi
-lopen-rte -lopen-pal -lnsl -lutil -lgcc_s -lpthread -lmpi_f90 -lmpi_f77
-lgfortran -lm -lm -lm -lm -lmpi_cxx -lstdc++ -lmpi_cxx -lstdc++ -ldl -lmpi
-lopen-rte -lopen-pal -lnsl -lutil -lgcc_s -lpthread -ldl
/usr/bin/ld: /usr/lib/petsc/linux-gnu-c-debug/lib/libpetsc.a(hypre.o):
undefined reference to symbol 'hypre__global_error'
/usr/bin/ld: note: 'hypre__global_error' is defined in DSO
/usr/lib64/libHYPRE_utilities-2.4.0.so so try adding it to the linker command
line
/usr/lib64/libHYPRE_utilities-2.4.0.so: could not read symbols: Invalid
operation
collect2: ld returned 1 exit status
make[1]: *** [checklink] Error 1
make[1]: Leaving directory
`/build/user-slepc_3.0.0-p7.dfsg-7.1-amd64-CoLS9k/slepc-3.0.0-p7.dfsg/config'
ERROR: Unable to link with PETSc
ERROR: See "linux-gnu-c-debug/conf/configure.log" file for details
Checking environment...
Checking PETSc installation...
WARNING: PETSc version 3.1.0 is newer than SLEPc version
ERROR: Unable to link with PETSc
make: *** [build-arch] Error 1
dpkg-buildpackage: error: debian/rules build gave error exit status 2
--- End Message ---
--- Begin Message ---
Source: slepc
Source-Version: 3.1-p6.dfsg-1
We believe that the bug you reported is fixed in the latest version of
slepc, which is due to be installed in the Debian FTP archive:
libslepc3.1-dbg_3.1-p6.dfsg-1_amd64.deb
to main/s/slepc/libslepc3.1-dbg_3.1-p6.dfsg-1_amd64.deb
libslepc3.1-dev_3.1-p6.dfsg-1_amd64.deb
to main/s/slepc/libslepc3.1-dev_3.1-p6.dfsg-1_amd64.deb
libslepc3.1_3.1-p6.dfsg-1_amd64.deb
to main/s/slepc/libslepc3.1_3.1-p6.dfsg-1_amd64.deb
slepc3.1-doc_3.1-p6.dfsg-1_all.deb
to main/s/slepc/slepc3.1-doc_3.1-p6.dfsg-1_all.deb
slepc_3.1-p6.dfsg-1.diff.gz
to main/s/slepc/slepc_3.1-p6.dfsg-1.diff.gz
slepc_3.1-p6.dfsg-1.dsc
to main/s/slepc/slepc_3.1-p6.dfsg-1.dsc
slepc_3.1-p6.dfsg.orig.tar.gz
to main/s/slepc/slepc_3.1-p6.dfsg.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Christophe Prud'homme <[email protected]> (supplier of updated slepc package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Fri, 29 Apr 2011 04:05:06 +0200
Source: slepc
Binary: libslepc3.1-dev libslepc3.1 libslepc3.1-dbg slepc3.1-doc
Architecture: source all amd64
Version: 3.1-p6.dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Christophe Prud'homme <[email protected]>
Description:
libslepc3.1 - Scalable Library for Eigenvalue Problem Computations
libslepc3.1-dbg - Scalable Library for Eigenvalue Problem Computations
libslepc3.1-dev - Scalable Library for Eigenvalue Problem Computations
slepc3.1-doc - Scalable Library for Eigenvalue Problem Computations
Closes: 610587 615774 623447
Changes:
slepc (3.1-p6.dfsg-1) unstable; urgency=low
.
[ Christophe Prud'homme ]
* New upstream release
* Bug fix: "please upgrade 3.1", thanks to trophime (Closes: #610587).
* Bug fix: "ftbfs with gold or ld --no-add-needed", thanks to Matthias
Klose (Closes: #615774).
* Bug fix: "FTBFS on armel, ia64, mips and sparc", thanks to Mehdi
Dogguy (Closes: #623447).
* debian/patches: update petsc-shlib-link.patch for slepc 3.1
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Files:
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slepc3.1-doc_3.1-p6.dfsg-1_all.deb
95513307bf8cd655b99fea466678a8e2 1247546 libdevel extra
libslepc3.1-dev_3.1-p6.dfsg-1_amd64.deb
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libslepc3.1_3.1-p6.dfsg-1_amd64.deb
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