Your message dated Mon, 23 Apr 2012 07:17:51 +0000
with message-id <[email protected]>
and subject line Bug#667325: fixed in plink 1.07-2
has caused the Debian Bug report #667325,
regarding plink: ftbfs with GCC-4.7
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
667325: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=667325
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: plink
Version: 1.07-1
Severity: important
Tags: sid wheezy
User: [email protected]
Usertags: ftbfs-gcc-4.7
The package fails to build in a test rebuild on at least amd64 with
gcc-4.7/g++-4.7, but succeeds to build with gcc-4.6/g++-4.6. The
severity of this report may be raised before the wheezy release.
sets.cpp:771:37: error: redeclaration of 'std::vector<Individual*>::iterator i'
The full build log can be found at:
http://people.debian.org/~lucas/logs/2012/03/29-clang-gcc47/unstable-gcc47/plink_1.07-1_unstable-gcc47.log
The last lines of the build log are at the end of this report.
Some hints on fixing these issues can be found at
http://gcc.gnu.org/gcc-4.7/porting_to.html
To build with GCC 4.7, either set CC=gcc-4.7 CXX=g++-4.7 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
[...]
sets.cpp:317:30: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
sets.cpp:323:40: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
sets.cpp:329:40: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
sets.cpp:332:39: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
sets.cpp:367:34: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
sets.cpp:370:37: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
sets.cpp: In member function 'void Set::initialiseSetMapping()':
sets.cpp:412:30: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
sets.cpp:413:38: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
sets.cpp: In member function 'void Set::empiricalSetPValues()':
sets.cpp:618:36: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
sets.cpp:619:34: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
sets.cpp:631:34: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
sets.cpp:632:32: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
sets.cpp:642:34: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
sets.cpp:643:32: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
sets.cpp: In member function 'vector_t Set::profileTestScore()':
sets.cpp:703:31: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
sets.cpp:713:43: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
sets.cpp:771:37: error: redeclaration of 'std::vector<Individual*>::iterator i'
sets.cpp:703:12: error: 'int i' previously declared here
sets.cpp: In member function 'vector_t Set::fitLDSetTest(vector_t&, bool)':
sets.cpp:905:31: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
sets.cpp:975:34: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
sets.cpp: In member function 'vector_t Set::fitStepwiseModel()':
sets.cpp:1042:31: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
make[1]: *** [sets.o] Error 1
make[1]: Leaving directory `/«PKGBUILDDIR»'
make: *** [build-stamp] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
--- End Message ---
--- Begin Message ---
Source: plink
Source-Version: 1.07-2
We believe that the bug you reported is fixed in the latest version of
plink, which is due to be installed in the Debian FTP archive:
plink_1.07-2.debian.tar.gz
to main/p/plink/plink_1.07-2.debian.tar.gz
plink_1.07-2.dsc
to main/p/plink/plink_1.07-2.dsc
plink_1.07-2_amd64.deb
to main/p/plink/plink_1.07-2_amd64.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated plink package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Sun, 22 Apr 2012 18:55:34 +0200
Source: plink
Binary: plink
Architecture: source amd64
Version: 1.07-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
plink - whole-genome association analysis toolset
Closes: 667325
Changes:
plink (1.07-2) unstable; urgency=low
.
* debian/control:
- Standards-Version: 3.9.3 (no changes needed)
- Fixed Vcs fields
- Removed quilt from Build-Depends
* debian/upstream: Added citation information
* debian/source/format: 3.0 (quilt)
* debian/get-orig-source: Better chances to get a unique upstream
tarball after repackaging
* debian/copyright:
- Rewritten to match DEP5 and verified using
cme fix dpkg-copyright
- Fix FSF address
* debian/rules: Rewritten to use short dh
* debian/patches/gcc-4.7.patch: Fix nested declaration
Thanks for the hints on debian-mentors list to
Rodolfo García Peñas <[email protected]>, Dmitry Nezhevenko <[email protected]>,
Fernando Lemos <[email protected]
Closes: 667325
* Debhelper 9 (control+compat)
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--- End Message ---
