Your message dated Wed, 27 Nov 2013 09:20:35 +0000 with message-id <[email protected]> and subject line Bug#730592: fixed in r-bioc-biostrings 2.30.1-1 has caused the Debian Bug report #730592, regarding r-bioc-biostrings: FTBFS: error: unknown type name 'cachedCharSeq' to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 730592: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=730592 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: r-bioc-biostrings Version: 2.28.0-1 Severity: serious Hi, r-bioc-biostrings FTBFS like this: ... gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/IRanges/include" -fpic -O3 -pipe -g -c BAB_class.c -o BAB_class.o In file included from Biostrings.h:1:0, from BAB_class.c:5: ../inst/include/Biostrings_defines.h:50:2: error: unknown type name 'cachedCharSeq' ../inst/include/Biostrings_defines.h:59:1: error: unknown type name 'cachedXVectorList' In file included from BAB_class.c:5:0: Biostrings.h:32:2: error: unknown type name 'cachedCharSeq' Biostrings.h:51:2: error: unknown type name 'cachedCharSeq' Biostrings.h:56:2: error: unknown type name 'cachedCharSeq' Biostrings.h:104:2: error: unknown type name 'cachedCharSeq' Biostrings.h:112:2: error: unknown type name 'cachedCharSeq' Biostrings.h:144:1: error: unknown type name 'cachedCharSeq' Biostrings.h:514:2: error: unknown type name 'cachedCharSeq' Biostrings.h:515:2: error: unknown type name 'cachedCharSeq' Biostrings.h:526:2: error: unknown type name 'cachedCharSeq' Biostrings.h:527:2: error: unknown type name 'cachedCharSeq' Biostrings.h:535:2: error: unknown type name 'cachedCharSeq' Biostrings.h:536:2: error: unknown type name 'cachedCharSeq' Biostrings.h:577:2: error: unknown type name 'cachedCharSeq' Biostrings.h:578:2: error: unknown type name 'cachedCharSeq' Biostrings.h:591:2: error: unknown type name 'cachedCharSeq' Biostrings.h:592:2: error: unknown type name 'cachedCharSeq' Biostrings.h:604:2: error: unknown type name 'cachedCharSeq' Biostrings.h:605:2: error: unknown type name 'cachedCharSeq' Biostrings.h:617:2: error: unknown type name 'cachedCharSeq' Biostrings.h:618:2: error: unknown type name 'cachedCharSeq' Biostrings.h:627:2: error: unknown type name 'cachedCharSeq' Biostrings.h:628:2: error: unknown type name 'cachedCharSeq' Biostrings.h:947:2: error: unknown type name 'cachedCharSeq' Biostrings.h:958:2: error: unknown type name 'cachedCharSeq' Biostrings.h:977:2: error: unknown type name 'cachedCharSeq' Biostrings.h:1029:2: error: unknown type name 'cachedCharSeq' Biostrings.h:1037:2: error: unknown type name 'cachedCharSeq' make[1]: *** [BAB_class.o] Error 1 make[1]: Leaving directory `/«PKGBUILDDIR»/src' make[1]: Entering directory `/«PKGBUILDDIR»/src' make[1]: Leaving directory `/«PKGBUILDDIR»/src' ERROR: compilation failed for package 'Biostrings' * removing '/«PKGBUILDDIR»/debian/r-bioc-biostrings/usr/lib/R/site-library/Biostrings' make: *** [R_any_arch] Error 1 ... Roland -- System Information: Debian Release: 7.0 APT prefers unreleased APT policy: (500, 'unreleased'), (500, 'unstable') Architecture: powerpcspe (ppc) Kernel: Linux 3.9.0-dirty (SMP w/2 CPU cores) Locale: LANG=en_US.utf8, LC_CTYPE=en_US.utf8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash
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--- Begin Message ---Source: r-bioc-biostrings Source-Version: 2.30.1-1 We believe that the bug you reported is fixed in the latest version of r-bioc-biostrings, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <[email protected]> (supplier of updated r-bioc-biostrings package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 1.8 Date: Tue, 26 Nov 2013 22:35:09 +0100 Source: r-bioc-biostrings Binary: r-bioc-biostrings Architecture: source amd64 Version: 2.30.1-1 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Andreas Tille <[email protected]> Description: r-bioc-biostrings - GNU R string objects representing biological sequences Closes: 730592 Changes: r-bioc-biostrings (2.30.1-1) unstable; urgency=low . * New upstream version Closes: #730592 * debian/{control,copyright}: Fixed homepage * Build-Depends: r-bioc-xvector Checksums-Sha1: 923b4decf343eb4fc15b53fc176b9aba8b8e6297 1507 r-bioc-biostrings_2.30.1-1.dsc 1ad83c6bd1320977739082a9afe5b6dd722d8a34 1459464 r-bioc-biostrings_2.30.1.orig.tar.gz 1f4083b02bb48c26cb2fbdcb57d10efada635468 3305 r-bioc-biostrings_2.30.1-1.debian.tar.gz ee683b75134eb0cd798c1c711845ae77f232effc 2229836 r-bioc-biostrings_2.30.1-1_amd64.deb Checksums-Sha256: d140a1dc520dbc55804bae3383087c849f484c28a8cc2c4bcd71424d4b2bd9cc 1507 r-bioc-biostrings_2.30.1-1.dsc ecd44bbde20cff08c9da1cf9bfc5516dd00d00d67d90a7c0f40ba344c3157aef 1459464 r-bioc-biostrings_2.30.1.orig.tar.gz ad22302889d0e2e7a0efe781e72e106da2e4b08dd18f9ac61c58d51d40ef6c3d 3305 r-bioc-biostrings_2.30.1-1.debian.tar.gz 2409f072f49746350f55520a06ec9bb8ac85e63e8809fa0e924b6353d491b4d6 2229836 r-bioc-biostrings_2.30.1-1_amd64.deb Files: 09b150e8dd1ed930c14a9442174e5229 1507 gnu-r optional r-bioc-biostrings_2.30.1-1.dsc acf4d4047855f20096e751cf5fadbf5e 1459464 gnu-r optional r-bioc-biostrings_2.30.1.orig.tar.gz 73222819b07d50534de1d7ec3bcdc333 3305 gnu-r optional r-bioc-biostrings_2.30.1-1.debian.tar.gz 131ea95b0fa9d14f416a7b536a655352 2229836 gnu-r optional r-bioc-biostrings_2.30.1-1_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.15 (GNU/Linux) iEYEARECAAYFAlKVpa0ACgkQYDBbMcCf01oAOQCglGfZsyR/LL/KW6M+R9qOjr3j lYsAoJV5K/euoN2+noDwb4FireVdxUE4 =rlvY -----END PGP SIGNATURE-----
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