Your message dated Thu, 16 Jan 2014 12:49:59 +0000
with message-id <[email protected]>
and subject line Bug#735546: fixed in r-bioc-iranges 1.20.6-2
has caused the Debian Bug report #735546,
regarding autopkgtest fails on missing runit, stderr, and test failures
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
735546: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=735546
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: r-bioc-iranges
Version: 1.20.6-1
Tags: patch
User: [email protected]
Usertags: origin-ubuntu ubuntu-patch trusty
Hello,
r-bioc-iranges's autopkgtest currently fails [1]:
Error in BiocGenerics:::testPackage("IRanges") : RUnit package not found
After adding it (r-cran-runit), it fails because the test produces a
lot of stderror. Attached debdiff fixes these two, but now the test
encounters some actual failures:
Error in .CompressedIRangesList.range(x) :
the XVector package is required by the "range" method for
CompressedIRangesList objects
(it repeats that a few times).
Attached debdiff fixes all these issues, the autopkgtest succeeds now.
Thanks for considering,
Martin
[1]
https://jenkins.qa.ubuntu.com/job/trusty-adt-r-bioc-iranges/8/ARCH=i386,label=adt/console
--
Martin Pitt | http://www.piware.de
Ubuntu Developer (www.ubuntu.com) | Debian Developer (www.debian.org)
diff -Nru r-bioc-iranges-1.20.6/debian/changelog
r-bioc-iranges-1.20.6/debian/changelog
--- r-bioc-iranges-1.20.6/debian/changelog 2013-12-03 11:42:42.000000000
+0100
+++ r-bioc-iranges-1.20.6/debian/changelog 2014-01-16 12:21:24.000000000
+0100
@@ -1,3 +1,10 @@
+r-bioc-iranges (1.20.6-1ubuntu1) trusty; urgency=medium
+
+ * debian/tests/control: Add missing r-cran-runit and r-bioc-xvector test
+ dependencies, and allow stderr output.
+
+ -- Martin Pitt <[email protected]> Thu, 16 Jan 2014 12:11:17 +0100
+
r-bioc-iranges (1.20.6-1) unstable; urgency=low
* New upstream version
diff -Nru r-bioc-iranges-1.20.6/debian/tests/control
r-bioc-iranges-1.20.6/debian/tests/control
--- r-bioc-iranges-1.20.6/debian/tests/control 2013-11-05 09:42:06.000000000
+0100
+++ r-bioc-iranges-1.20.6/debian/tests/control 2014-01-16 12:16:28.000000000
+0100
@@ -1 +1,3 @@
Tests: run-unit-test
+Depends: @, r-cran-runit, r-bioc-xvector
+Restrictions: allow-stderr
signature.asc
Description: Digital signature
--- End Message ---
--- Begin Message ---
Source: r-bioc-iranges
Source-Version: 1.20.6-2
We believe that the bug you reported is fixed in the latest version of
r-bioc-iranges, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated r-bioc-iranges package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Thu, 16 Jan 2014 13:35:56 +0100
Source: r-bioc-iranges
Binary: r-bioc-iranges
Architecture: source amd64
Version: 1.20.6-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
r-bioc-iranges - GNU R low-level containers for storing sets of integer ranges
Closes: 735546
Changes:
r-bioc-iranges (1.20.6-2) unstable; urgency=medium
.
[ Martin Pitt ]
* debian/tests/control: Add missing r-cran-runit and r-bioc-xvector test
dependencies, and allow stderr output.
Closes: #735546
.
[ Andreas Tille ]
* Standards-Version: 3.9.5
Checksums-Sha1:
187c588c1aa157d9f402e14092ece571f7e129a2 1474 r-bioc-iranges_1.20.6-2.dsc
110f1406e9281eacfca522dc9806662132bfd88e 3971
r-bioc-iranges_1.20.6-2.debian.tar.gz
76051fcd4db4b48377635142fafddf78027afb25 1854928
r-bioc-iranges_1.20.6-2_amd64.deb
Checksums-Sha256:
8fe0e15b6073112d2f4c6ff899f7dcc7d252a50d5d53dfaad7b25661620b0520 1474
r-bioc-iranges_1.20.6-2.dsc
2acd194504f6a7bddac5a0d963f7d95f50bf14bd6bb1d388cf28cc8f816c141d 3971
r-bioc-iranges_1.20.6-2.debian.tar.gz
eca43368fc7c82809c14cce41ec817a4cc8039d6bd26c10105d286b817b982b9 1854928
r-bioc-iranges_1.20.6-2_amd64.deb
Files:
9d7f4852ba23182ab583e1616a201880 1474 gnu-r optional
r-bioc-iranges_1.20.6-2.dsc
a5ad75aeb2bf6c66eb3a9ab481f9d25a 3971 gnu-r optional
r-bioc-iranges_1.20.6-2.debian.tar.gz
7392c080bdebc72ca604e57bac443f45 1854928 gnu-r optional
r-bioc-iranges_1.20.6-2_amd64.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1
iEYEARECAAYFAlLX0vQACgkQYDBbMcCf01oJLACeOW7Nse3+bLGl59qUpLMGeYMF
c/AAnjEB1JvLpl7LfttqVs8a3FRp+VKd
=ctbn
-----END PGP SIGNATURE-----
--- End Message ---
