Your message dated Sat, 24 May 2014 21:19:33 +0000
with message-id <[email protected]>
and subject line Bug#748305: fixed in genometools 1.5.2-4
has caused the Debian Bug report #748305,
regarding Unchecked conversion from double to enum
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
748305: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=748305
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: genometools
Version: 1.5.1-3
Usertags: goto-cc
During a rebuild of all packages in a clean sid chroot (and cowbuilder+pbuilder)
the build failed with the following error. Please note that we use our research
compiler tool-chain (using tools from the cbmc package), which permits extended
reporting on type inconsistencies at link time.
[...]
[compile encseq_lua.o]
file src/gtlua/encseq_lua.c line 83 function
encseq_reader_lua_reinit_with_readmode: in expression `luaL_checknumber(L, 3)':
conversion from `double' to `int': implicit conversion not permitted
CONVERSION ERROR
make[2]: *** [obj/src/gtlua/encseq_lua.o] Error 64
make[2]: Leaving directory
`/srv/jenkins-slave/workspace/sid-goto-cc-genometools/genometools-1.5.1'
Indeed reviewing the code here
http://sources.debian.net/src/genometools/1.5.1-3/src/gtlua/encseq_lua.c?hl=83#L83
and taking into account the definition of luaL_checknumber on the one hand and
GtReadmode on the other:
http://sources.debian.net/src/genometools/1.5.1-2/src/external/lua-5.1.5/src/lauxlib.c?hl=176#L176
http://sources.debian.net/src/genometools/1.5.1-2/src/core/readmode_api.h#L23
this conversion appears to be dangerous at best: if a double value is return
that does not result in any of the int values 0, 1, 2, 3 all further code may
break.
Best,
Michael
pgpCXOtdMIwWc.pgp
Description: PGP signature
--- End Message ---
--- Begin Message ---
Source: genometools
Source-Version: 1.5.2-4
We believe that the bug you reported is fixed in the latest version of
genometools, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sascha Steinbiss <[email protected]> (supplier of updated
genometools package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 24 May 2014 18:57:45 +0000
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev
genometools-doc genometools-dbg python-genometools
Architecture: source amd64 all
Version: 1.5.2-4
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Sascha Steinbiss <[email protected]>
Description:
genometools - versatile genome analysis toolkit
genometools-common - shared data files for GenomeTools
genometools-dbg - versatile genome analysis toolkit, with debug symbols
genometools-doc - documentation for GenomeTools
libgenometools0 - versatile genome analysis library
libgenometools0-dev - development files for GenomeTools
python-genometools - Python bindings for genometools
Closes: 748305
Changes:
genometools (1.5.2-4) unstable; urgency=low
.
* Incorporate patches addressing type conversion errors (thanks to
Michael Tautschnig).
Closes: #748305
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