Your message dated Mon, 11 Aug 2014 11:04:18 +0000
with message-id <[email protected]>
and subject line Bug#756472: fixed in gmsh 2.8.5+dfsg-1.1
has caused the Debian Bug report #756472,
regarding gmsh: fix cmake HDF5 detection
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
756472: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=756472
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: gmsh
Version: 2.8.4+dfsg-1
Severity: normal
Tags: patch
User: [email protected]
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Hi,
Please find attached a patch proposal to fix cmake HDF5 detection when
it isn't installed in the standard path.
This patch fixes a FTBFS against hdf5 1.8.13 currently in experimental.
Thanks in advance,
_g.
- -- System Information:
Debian Release: jessie/sid
APT prefers testing
APT policy: (500, 'testing'), (1, 'experimental')
Architecture: i386 (i686)
Kernel: Linux 3.14-1-486
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1
iQEcBAEBCAAGBQJT2KFQAAoJEO/obGx//s+DLTEIAIZ49CQsgHiraWVN5L/QS88B
T341oZA5BWJlZfRVjpzoCWGfYCJVuHRhY5ZEvwJw5EZlTlTQX+Ul05JuOeLXUbGV
mIA3/2nM1Sy6kF2ncKU7RTMgiTBQ0DN7aQBWTiuUeaqVg3haaBOk6ihmbwxTS913
qI7paWxfHtsHUNkvUlA4yG04XAAkKZNm03Y3fj0jKXjQOynCJ/JQOGyQ2X3HHS1M
ek+LV74XVOwNmHXXqwfOIwGJhyVR7/tF5QswqNPe19l0oy+7UnK9ov4njoqhb4nA
msuCCMzABzpbNLHiBEyvmE3/CSaFwPCOrwW2g4u26+mRrhi8w1ZR2aWSPDc5C1M=
=raHr
-----END PGP SIGNATURE-----
diff -Nru gmsh-2.8.4+dfsg/debian/changelog gmsh-2.8.4+dfsg/debian/changelog
--- gmsh-2.8.4+dfsg/debian/changelog 2014-02-11 07:42:58.000000000 +0100
+++ gmsh-2.8.4+dfsg/debian/changelog 2014-07-25 00:43:50.000000000 +0200
@@ -1,3 +1,11 @@
+gmsh (2.8.4+dfsg-1.1) unstable; urgency=low
+
+ * Non-maintainer upload.
+ * New patch fix-cmake-hdf5.patch to support hdf5 1.8.13 new packaging
+ layout.
+
+ -- Gilles Filippini <[email protected]> Fri, 25 Jul 2014 00:43:50 +0200
+
gmsh (2.8.4+dfsg-1) unstable; urgency=medium
* [09d4b69] Imported Upstream version 2.8.4+dfsg
diff -Nru gmsh-2.8.4+dfsg/debian/patches/fix-cmake-hdf5.patch gmsh-2.8.4+dfsg/debian/patches/fix-cmake-hdf5.patch
--- gmsh-2.8.4+dfsg/debian/patches/fix-cmake-hdf5.patch 1970-01-01 01:00:00.000000000 +0100
+++ gmsh-2.8.4+dfsg/debian/patches/fix-cmake-hdf5.patch 2014-07-25 12:00:18.000000000 +0200
@@ -0,0 +1,29 @@
+Index: gmsh-2.8.4+dfsg/CMakeLists.txt
+===================================================================
+--- gmsh-2.8.4+dfsg.orig/CMakeLists.txt 2014-07-25 00:43:13.000000000 +0200
++++ gmsh-2.8.4+dfsg/CMakeLists.txt 2014-07-25 12:00:12.512894965 +0200
+@@ -779,8 +779,10 @@
+ endif(ENABLE_FOURIER_MODEL)
+
+ if(ENABLE_MED OR ENABLE_CGNS)
+- find_library(HDF5_LIB hdf5)
+- if(HDF5_LIB)
++ find_package(HDF5)
++ if(HDF5_FOUND)
++ set(HDF5_LIB "${HDF5_C_LIBRARIES}")
++ list(APPEND EXTERNAL_INCLUDES ${HDF5_INCLUDE_DIRS})
+ if(ENABLE_MED)
+ find_library(MED_LIB med)
+ if(MED_LIB)
+@@ -811,9 +813,9 @@
+ endif(ZLIB_FOUND)
+ endif(NOT HAVE_LIBZ)
+ endif(MED_LIB OR CGNS_LIB)
+- else(HDF5_LIB)
++ else(HDF5_FOUND)
+ message(STATUS "HDF5 not found")
+- endif(HDF5_LIB)
++ endif(HDF5_FOUND)
+ endif(ENABLE_MED OR ENABLE_CGNS)
+
+ if(HAVE_SOLVER)
diff -Nru gmsh-2.8.4+dfsg/debian/patches/series gmsh-2.8.4+dfsg/debian/patches/series
--- gmsh-2.8.4+dfsg/debian/patches/series 2014-02-10 21:11:17.000000000 +0100
+++ gmsh-2.8.4+dfsg/debian/patches/series 2014-07-25 00:44:39.000000000 +0200
@@ -9,3 +9,4 @@
fix_script_header.patch
fix_java_wrapper_compilation.patch
enable_tetgen.patch
+fix-cmake-hdf5.patch
--- End Message ---
--- Begin Message ---
Source: gmsh
Source-Version: 2.8.5+dfsg-1.1
We believe that the bug you reported is fixed in the latest version of
gmsh, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Gilles Filippini <[email protected]> (supplier of updated gmsh package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 25 Jul 2014 00:43:50 +0200
Source: gmsh
Binary: gmsh gmsh-doc libgmsh-dev libgmsh2 libjava-gmsh2 python-gmsh
Architecture: source amd64 all
Version: 2.8.5+dfsg-1.1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Gilles Filippini <[email protected]>
Description:
gmsh - Three-dimensional finite element mesh generator
gmsh-doc - Three-dimensional finite element mesh generator
libgmsh-dev - Three-dimensional finite element mesh generator. Development file
libgmsh2 - Three-dimensional finite element mesh generator. Shared library
libjava-gmsh2 - Three-dimensional finite element mesh generator. Java wrapper
python-gmsh - Three-dimensional finite element mesh generator. Python wrapper
Closes: 756472
Changes:
gmsh (2.8.5+dfsg-1.1) unstable; urgency=medium
.
* Non-maintainer upload.
* New patch fix-cmake-hdf5.patch to support hdf5 1.8.13 new packaging
layout (closes: #756472).
Checksums-Sha1:
cd3f73a54526b1586f55ea6b990b040595347846 2944 gmsh_2.8.5+dfsg-1.1.dsc
a77fb580b16e6ae26c67ea725da2c29a923c3a71 26856
gmsh_2.8.5+dfsg-1.1.debian.tar.xz
98495b747c0913e76f5ea10bc3c89d485a98368c 4949868 gmsh_2.8.5+dfsg-1.1_amd64.deb
cb0a4d9f189f53299a5f239482ccdc5827903d4d 1273560
gmsh-doc_2.8.5+dfsg-1.1_all.deb
fe648fd948908fd36cc8aeb4b716c0c374c77ae1 165686
libgmsh-dev_2.8.5+dfsg-1.1_amd64.deb
9566ec5cac89763e96b7440ea86e1cf1cebd710c 5122834
libgmsh2_2.8.5+dfsg-1.1_amd64.deb
b4ba8ade1e83eec64a0ada5282fb52526e35257d 337846
libjava-gmsh2_2.8.5+dfsg-1.1_amd64.deb
37a098c9540f9e6c3883c28d074b1d7005ba6170 1224562
python-gmsh_2.8.5+dfsg-1.1_amd64.deb
Checksums-Sha256:
dcae18c54a510ae1aabdeb269e7753e0a67f6e96c95c92f437bedee3b94596f0 2944
gmsh_2.8.5+dfsg-1.1.dsc
a7b7c4dddd04854b0bbbc23eee503da2780f89ebf2431d48d4fd2a76dcd07a5e 26856
gmsh_2.8.5+dfsg-1.1.debian.tar.xz
48de6c239fd2fe9715658eb4f6295d1d37abfd5b4d594b6f730c65cb3328da40 4949868
gmsh_2.8.5+dfsg-1.1_amd64.deb
03456b1a1e2dde78019eb26dc8401e770923e081744aaf3fa2a2db4c5a8069e9 1273560
gmsh-doc_2.8.5+dfsg-1.1_all.deb
ab1a745589816cca9930c8ade6a95930b3836d88c0319146adebebbaf6addedf 165686
libgmsh-dev_2.8.5+dfsg-1.1_amd64.deb
02f31dfc4620378add520562c78375f41ad01d055c9020295a087d6da02eb8dd 5122834
libgmsh2_2.8.5+dfsg-1.1_amd64.deb
f181ca2bf794eeb23478b2abaf8a4d60413e711edf5858088e4b57135ee470e2 337846
libjava-gmsh2_2.8.5+dfsg-1.1_amd64.deb
561db24cd371341ee7b37c83bd4efc468ce34894a9c814ca5c5f6ac1a230ff07 1224562
python-gmsh_2.8.5+dfsg-1.1_amd64.deb
Files:
3c8d6a3d1a47eb1f66457e4284582ddf 4949868 math optional
gmsh_2.8.5+dfsg-1.1_amd64.deb
7662b52859f79b8fe63a88ddc0d0f47d 1273560 doc optional
gmsh-doc_2.8.5+dfsg-1.1_all.deb
88de726728f4e6051d9bd34309112286 165686 libdevel optional
libgmsh-dev_2.8.5+dfsg-1.1_amd64.deb
c9cf9ab736b1fc13acf6b3a5e4878626 5122834 libs optional
libgmsh2_2.8.5+dfsg-1.1_amd64.deb
7a7d707dae0264ccf265d099efd95da3 337846 java optional
libjava-gmsh2_2.8.5+dfsg-1.1_amd64.deb
ba0faf8dc6368c806a56bc00a81e86d1 1224562 python optional
python-gmsh_2.8.5+dfsg-1.1_amd64.deb
b279fd8b7a56ade7cf5eaea1adf99c85 2944 math optional gmsh_2.8.5+dfsg-1.1.dsc
dbff7f49c083ecdc30fbf96ed72cf58e 26856 math optional
gmsh_2.8.5+dfsg-1.1.debian.tar.xz
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1
iQEcBAEBCAAGBQJT4gR/AAoJEO/obGx//s+DlLEIAJlZEGJrwxy4rPsSHws3pEkG
IpSxV3O5dwIVO+sjS0OyylKZao17bUpb1x7YgarO6FSJ7sfJ2TEnTYc9KXJ+BzUC
O3uuSW2WYg7dZ6TIwngCOyBuoAt+1dTcUJ52+tnsr/XKLlzH0X8L13WxRSYut6dx
gbhhxaOyZbFcJoeEkviFQn2GxVonDkACGRKsh+N+dmhH+UpUDTLoFp3yzkga+Neu
TAuB0LUX3TsG9yaJK6s70IGHwEd9cMMOfvsIC54x01DzPfrYaVDQ/UKc0mAI12Fr
OmdPuMqxFRTLfNJkE7mU1tToqPNUvx35x0RLMrQCjzMHWPJHseTpw+1jmNPPpKk=
=8s0I
-----END PGP SIGNATURE-----
--- End Message ---
