Your message dated Wed, 18 Feb 2015 23:50:16 +0000
with message-id <[email protected]>
and subject line Bug#776812: fixed in vsearch 1.0.14+dfsg-1
has caused the Debian Bug report #776812,
regarding vsearch: FTBFS on non-x86: uses non-portable flags
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
776812: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=776812
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: vsearch
Version: 1.0.7+dfsg-1
Severity: important
Justification: fails to build from source
Builds of vsearch on non-x86 architectures have been failing due to its
use of the x86-specific compilation flags -msse2 and -mtune=core2.
(Most of the x86 builds have failed as well, due to different issues
I'll report separately.) -msse2 is bad practice even on x86: on *-i386,
it entirely precludes execution on older systems Debian otherwise
continues to support, and on *-amd64, it is redundant and as such
pointless. -mtune=core2 is okay on x86, but problematic elsewhere.
As such, could you please rescind the use of -msse2 altogether, and
either do the same for -mtune=core2 or at minimum use it only on x86?
Thanks!
--- End Message ---
--- Begin Message ---
Source: vsearch
Source-Version: 1.0.14+dfsg-1
We believe that the bug you reported is fixed in the latest version of
vsearch, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated vsearch package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 02 Feb 2015 07:40:07 +0100
Source: vsearch
Binary: vsearch vsearch-data
Architecture: source amd64 all
Version: 1.0.14+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
vsearch - tool for processing metagenomic sequences
vsearch-data - example data for vsearch tool for processing metagenomic
sequence
Closes: 776812 776814 776815
Changes:
vsearch (1.0.14+dfsg-1) unstable; urgency=medium
.
* New upstream version
* debian/README.source: Add proper information for data files
* drop -msse2 flag
* conditional use of -mtune flag
Closes: #776812
* Polishing manpage
* Lintian override for gzipped data file
* debian/upstream/metadata: add some related references (note: currently
there is no publication about vsearch itself)
* Fix build issue on Hurd (Thanks for the hint to Samuel Thibault
<[email protected]>)
Closes: #776815
* Fix build issue on BSD by using the POSIX sysconf(3) (Thanks for the
patch to Jeff Epler <[email protected]>)
Closes: #776814
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