Your message dated Mon, 18 May 2015 10:19:19 +0000
with message-id <[email protected]>
and subject line Bug#780437: fixed in bamtools 2.3.0+dfsg-3
has caused the Debian Bug report #780437,
regarding src:bamtools: fix indent in package description and other small issues
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
780437: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=780437
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:bamtools
Severity: minor
Tags: patch
Dear Maintainer,
the list of available bamtools commands in the description of the package is
reflown as you can see at
https://packages.debian.org/en/sid/bamtools
because the lines do not start with an additional space as per
https://www.debian.org/doc/debian-policy/ch-controlfields.html#s-f-Description
The attached patch fixes the indent by adding the space, removes a trailing
space from another line, fixes a typo and adds full stops at the end of 3 lines.
thanks,
Daniele
--- debian/control.orig 2014-06-30 10:01:05.000000000 +0200
+++ debian/control 2015-03-13 21:46:19.269129650 +0100
@@ -29,24 +29,24 @@
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
- This is the bamtools command-line toolkit
+ This is the bamtools command-line toolkit.
.
Available bamtools commands:
- convert Converts between BAM and a number of other formats
- count Prints number of alignments in BAM file(s)
- coverage Prints coverage statistics from the input BAM file
- filter Filters BAM file(s) by user-specified criteria
- header Prints BAM header information
- index Generates index for BAM file
- merge Merge multiple BAM files into single file
- random Select random alignments from existing BAM file(s), intended more as
- a testing tool.
- resolve Resolves paired-end reads (marking the IsProperPair flag as needed)
- revert Removes duplicate marks and restores original base qualities
- sort Sorts the BAM file according to some criteria
- split Splits a BAM file on user-specified property, creating a new BAM
- output file for each value found
- stats Prints some basic statistics from input BAM file(s)
+ convert Converts between BAM and a number of other formats
+ count Prints number of alignments in BAM file(s)
+ coverage Prints coverage statistics from the input BAM file
+ filter Filters BAM file(s) by user-specified criteria
+ header Prints BAM header information
+ index Generates index for BAM file
+ merge Merge multiple BAM files into single file
+ random Select random alignments from existing BAM file(s), intended more
+ as a testing tool.
+ resolve Resolves paired-end reads (marking the IsProperPair flag as needed)
+ revert Removes duplicate marks and restores original base qualities
+ sort Sorts the BAM file according to some criteria
+ split Splits a BAM file on user-specified property, creating a new BAM
+ output file for each value found
+ stats Prints some basic statistics from input BAM file(s)
Package: libbamtools-dev
Architecture: any
@@ -54,7 +54,7 @@
Depends: libbamtools2.3.0 (= ${binary:Version}),
${misc:Depends}
Description: C++ API for manipulating BAM (genome alignment) files
- BamTools facilitates research analysis and data management using BAM
+ BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
@@ -63,14 +63,14 @@
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
- This is the developers API package
+ This is the developers API package.
Package: libbamtools2.3.0
Architecture: any
Section: libs
Depends: ${shlibs:Depends},
${misc:Depends}
-Description: dynnamic library for manipulating BAM (genome alignment) files
+Description: dynamic library for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
@@ -80,4 +80,4 @@
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
- This is the runtime library
+ This is the runtime library.
--- End Message ---
--- Begin Message ---
Source: bamtools
Source-Version: 2.3.0+dfsg-3
We believe that the bug you reported is fixed in the latest version of
bamtools, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated bamtools package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 18 May 2015 11:53:14 +0200
Source: bamtools
Binary: bamtools libbamtools-dev libbamtools2.3.0
Architecture: source amd64
Version: 2.3.0+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
bamtools - toolkit for manipulating BAM (genome alignment) files
libbamtools-dev - C++ API for manipulating BAM (genome alignment) files
libbamtools2.3.0 - dynamic library for manipulating BAM (genome alignment)
files
Closes: 780437
Changes:
bamtools (2.3.0+dfsg-3) unstable; urgency=medium
.
[ Michael R. Crusoe ]
* Make Doxygen documentation generation reproducible by eliminating
timestamps.
.
[ Andreas Tille ]
* Install cmake file
* Fix some issues in formatting of long descriptions (thanks for the patch
to Daniele Forsi <[email protected]>)
Closes: #780437
* cme fix dpkg-control
Checksums-Sha1:
fcd8f37eecc5b5a10c6a55da4ee863feaa3771ce 2191 bamtools_2.3.0+dfsg-3.dsc
143db9ffefc2462af5964b85b86f92aa9750025c 157388 bamtools_2.3.0+dfsg.orig.tar.xz
ecee9fbcecdd907b59b0bf869bb014f65564a580 7420
bamtools_2.3.0+dfsg-3.debian.tar.xz
94fdbad57ee6008862a370e3bb6e67d5cecf09ba 184498 bamtools_2.3.0+dfsg-3_amd64.deb
742cac1b0db857fb7dabccd6e7f80f54f0ad19b2 210404
libbamtools-dev_2.3.0+dfsg-3_amd64.deb
72fe76186e4c65b42a8a64964057d048159a3057 167978
libbamtools2.3.0_2.3.0+dfsg-3_amd64.deb
Checksums-Sha256:
6281d80bcb428e24d3ee0aeeb3aed1517f57d61c054c1f2d2a2871161302463b 2191
bamtools_2.3.0+dfsg-3.dsc
e368ec57658f314df164744dd7ca7efa196e410096a52c71d0225c76de021b3f 157388
bamtools_2.3.0+dfsg.orig.tar.xz
448126a822cb7ef80ebd67196bd1757b8c49b0dcec9e10d67c460832b0659241 7420
bamtools_2.3.0+dfsg-3.debian.tar.xz
6b280f93f83372a59ea11fc394a2bd77f4523f8c731b43f01227d6cc6e3db153 184498
bamtools_2.3.0+dfsg-3_amd64.deb
af0762446c1279b47567cce88e159d37bdfe93101518c146a3cacacd3394940c 210404
libbamtools-dev_2.3.0+dfsg-3_amd64.deb
f5572358ba43051f84e94e48727f4760db08fad99df81412d0982ec169a419b3 167978
libbamtools2.3.0_2.3.0+dfsg-3_amd64.deb
Files:
ba4255abd28f0fdc51cba3e6ede658ff 2191 science optional
bamtools_2.3.0+dfsg-3.dsc
b802919c5fdd491a4bca689088940b25 157388 science optional
bamtools_2.3.0+dfsg.orig.tar.xz
0c9fdc5fd582d0b09fcadb56d6f77246 7420 science optional
bamtools_2.3.0+dfsg-3.debian.tar.xz
8cf7b1f76c55ec2d0e7a5ddafb475f13 184498 science optional
bamtools_2.3.0+dfsg-3_amd64.deb
fedc1aadb7ac943d5d8b6a0dd582a2e5 210404 libdevel optional
libbamtools-dev_2.3.0+dfsg-3_amd64.deb
05bc193f780efb217ed3165888c66b6f 167978 libs optional
libbamtools2.3.0_2.3.0+dfsg-3_amd64.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1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=g9Z6
-----END PGP SIGNATURE-----
--- End Message ---
