Your message dated Fri, 05 Jun 2015 06:33:53 +0000
with message-id <[email protected]>
and subject line Bug#787765: fixed in cassiopee 1.0.3+dfsg-2
has caused the Debian Bug report #787765,
regarding cassiopee: please make the build reproducible
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
787765: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=787765
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: cassiopee
Version: 1.0.3+dfsg
Severity: wishlist
Tags: patch
User: [email protected]
Usertags: timestamps
Hi,
While working on the “reproducible builds” effort [1], we have noticed
that cassiopee could not be built reproducibly.
The attached patch changes the value of HTML_TIMESTAMP in upstream's
doxyfile to NO. Once applied cassiopee can be built reproducibly in our
current experimental framework.
Patching upstream doxyfile is necessary in this case because of the
following reasons:
1. Even though the doxygen upstream changed the default value of
HTML_TIMESTAMP from YES to NO this does not affect this package because
the value of HTML_TIMESTAMP is explicitly set to YES.
2. Upstream's doxyfiles cannot reliably be modified to change the value
of HTML_TIMESTAMP during the build process because dh_doxygen is only
run after the build already completed and even adding a new dh command
cannot solve the problem because there exists no sane and reliable
solution to detect the file which will be used as the configuration file
for doxygen (it is not always called doxyfile).
3. In case of this source package a patch against upstream is necessary
in contrast to a patch against Debian rules because this source package
does not call doxygen in debian/rules.
Please also consider forwarding this patch upstream.
Cheers!
akira
[1]: https://wiki.debian.org/ReproducibleBuilds
--- End Message ---
--- Begin Message ---
Source: cassiopee
Source-Version: 1.0.3+dfsg-2
We believe that the bug you reported is fixed in the latest version of
cassiopee, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Olivier Sallou <[email protected]> (supplier of updated cassiopee package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 05 Jun 2015 08:19:31 +0200
Source: cassiopee
Binary: cassiopee libcassie-doc libcassie1 libcassie-dev
Architecture: source amd64 all
Version: 1.0.3+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Olivier Sallou <[email protected]>
Description:
cassiopee - index and search tool in genomic sequences
libcassie-dev - library and headers for development
libcassie-doc - documentation for cassiopee library
libcassie1 - library implementating search algorithms
Closes: 787765
Changes:
cassiopee (1.0.3+dfsg-2) unstable; urgency=medium
.
* Remove timestamp from doc for reproductibility builds (Closes: #787765).
- d/patches/HTML_timestamp-option
thanks to Maria Valentina Marin <[email protected]>
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