Your message dated Thu, 23 Jul 2015 15:42:43 +0000
with message-id <[email protected]>
and subject line Bug#793345: fixed in hyphy 2.2.5+dfsg-2
has caused the Debian Bug report #793345,
regarding hyphy: FTBFS on hurd-i386: cannot find -lc_p
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
793345: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=793345
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: hyphy
Version: 2.2.5+dfsg-1
Severity: important
The hurd-i386 build of hyphy failed:
/usr/bin/c++ -g -O2 -fstack-protector-strong -Wformat
-Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -g -fsigned-char
-O3 -msse3 -fopenmp -msse3 -g -fprofile-arcs -ftest-coverage -pg
CMakeFiles/HYPHYGTEST.dir/src/core/_hyExecutionContext.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/alignment.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/avllist.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/avllistx.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/avllistxl.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/baseobj.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/batchlan.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/batchlan2.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/batchlanhelpers.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/batchlanruntime.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/calcnode.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/calcnode2.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/category.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/constant.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/error.cpp.o CMakeFiles/HYPHYGTEST.d
ir/src/core/fisher_exact.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/formula.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/fstring.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/likefunc.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/likefunc2.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/likefuncocl.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/list.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/mathobj.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/matrix.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/nexus.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/operation.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/parser.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/parser2.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/polynoml.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/regex.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/sequence.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/simplelist.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/site.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/stack.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/strings.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/
trie.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/variable.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/core/variablecontainer.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/new/bayesgraph.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/new/bayesgraph2.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/new/bgm.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/new/bgm2.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/new/scfg.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/utils/hyphyunixutils.cpp.o
CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_avllists.cpp.o
CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_list.cpp.o
CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_simplelists.cpp.o
CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_strings.cpp.o
CMakeFiles/HYPHYGTEST.dir/src/mains/unix.cpp.o -o HYPHYGTEST -ldl -lpthread
-lcrypto -lcurl -lssl -lsqlite3 contrib/gtest-1.7.0/libgtest.a -lpthread
/usr/bin/ld: cannot find -lc_p
collect2: error: ld returned 1 exit status
make[5]: *** [HYPHYGTEST] Error 1
Could you please take a look?
Thanks!
--- End Message ---
--- Begin Message ---
Source: hyphy
Source-Version: 2.2.5+dfsg-2
We believe that the bug you reported is fixed in the latest version of
hyphy, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated hyphy package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 23 Jul 2015 17:13:45 +0200
Source: hyphy
Binary: hyphygui hyphy-pt hyphy-mpi hyphy-common python-hyphy python3-hyphy
Architecture: source all amd64
Version: 2.2.5+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
hyphy-common - Hypothesis testing using Phylogenies (common files)
hyphy-mpi - Hypothesis testing using Phylogenies (MPI version)
hyphy-pt - Hypothesis testing using Phylogenies (pthreads version)
hyphygui - Hypothesis testing using Phylogenies (GTK+ gui)
python-hyphy - Hypothesis testing using Phylogenies (Python 2 module)
python3-hyphy - Hypothesis testing using Phylogenies (Python 3 module)
Closes: 793344 793345 793346
Changes:
hyphy (2.2.5+dfsg-2) unstable; urgency=medium
.
* Versioned Build-Depends: cmake (>= 3.0)
* Drop profiling option (Thanks for the hint to Michael Banck
<[email protected]>)
Closes: #793345
* Disable unneded test that breaks on 32 bit architectures (Thanks for
the hint to Jakub Wilk <[email protected]>)
Closes: #793346
* Make sure that also in tests the existence of SSE3 extension is done
Closes: #793344
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hyphy-common_2.2.5+dfsg-2_all.deb
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hyphy-mpi_2.2.5+dfsg-2_amd64.deb
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hyphygui_2.2.5+dfsg-2_amd64.deb
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python-hyphy_2.2.5+dfsg-2_amd64.deb
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