Your message dated Wed, 25 Nov 2015 18:05:02 +0000
with message-id <[email protected]>
and subject line Bug#806101: fixed in qiime 1.9.1+dfsg-1
has caused the Debian Bug report #806101,
regarding qiime: FTBFS when built with dpkg-buildpackage -A (No such file or
directory)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
806101: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=806101
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:qiime
Version: 1.8.0+dfsg-4
User: [email protected]
Usertags: binary-indep
Severity: important
Dear maintainer:
I tried to build this package with "dpkg-buildpackage -A"
(i.e. only architecture-independent packages), and it failed:
--------------------------------------------------------------------------------
[...]
fakeroot debian/rules binary-indep
dh binary-indep --with python2
dh_testroot -i
dh_prep -i
dh_auto_install -i
python setup.py install --force
--root=/<<BUILDDIR>>/qiime-1.8.0\+dfsg/debian/tmp --no-compile -O0
--install-layout=deb
make[1]: Entering directory
'/<<BUILDDIR>>/qiime-1.8.0+dfsg/qiime/support_files/denoiser/FlowgramAlignment'
rm -f *.o
rm -f *.hi
rm -f FlowgramAli_4frame
rm -f ../../../../scripts/FlowgramAli_4frame
make[1]: Leaving directory
'/<<BUILDDIR>>/qiime-1.8.0+dfsg/qiime/support_files/denoiser/FlowgramAlignment'
make[1]: Entering directory
'/<<BUILDDIR>>/qiime-1.8.0+dfsg/qiime/support_files/denoiser/FlowgramAlignment'
ghc --make -O2 FlowgramAli_4frame
[1 of 3] Compiling ADPCombinators ( ADPCombinators.lhs, ADPCombinators.o )
[2 of 3] Compiling FlowgramUtils ( FlowgramUtils.lhs, FlowgramUtils.o )
[3 of 3] Compiling Main ( FlowgramAli_4frame.lhs,
FlowgramAli_4frame.o )
Linking FlowgramAli_4frame ...
cp FlowgramAli_4frame ../../../../scripts/
make[1]: Leaving directory
'/<<BUILDDIR>>/qiime-1.8.0+dfsg/qiime/support_files/denoiser/FlowgramAlignment'
/usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution
option: 'extras_require'
warnings.warn(msg)
[... snipped ...]
chmod: cannot access 'debian/qiime/usr/share/qiime/support_files/R/*': No such
file or directory
chmod a-x debian/qiime/usr/share/qiime/support_files/js/* || true
chmod: cannot access 'debian/qiime/usr/share/qiime/support_files/js/*': No such
file or directory
#Fix lintian warning for jquery
rm debian/qiime/usr/share/qiime/support_files/js/jquery.js && \
ln -s /usr/share/javascript/jquery/jquery.js
debian/qiime/usr/share/qiime/support_files/js
rm: cannot remove 'debian/qiime/usr/share/qiime/support_files/js/jquery.js': No
such file or directory
debian/rules:51: recipe for target 'override_dh_install' failed
make[1]: *** [override_dh_install] Error 1
make[1]: Leaving directory '/<<BUILDDIR>>/qiime-1.8.0+dfsg'
debian/rules:16: recipe for target 'binary-indep' failed
make: *** [binary-indep] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-indep gave error exit
status 2
--------------------------------------------------------------------------------
Sorry not to have a fix, as I am reporting many bugs similar to
this one, but I can give some general hints:
* If all the arch-independent packages are dummy transitional packages
released with jessie, the easy fix is to drop them now.
* If not, debian/rules should be modified so that the binary-indep
target works in all cases, even when binary-arch is not used (this is
what the "Architecture: all" autobuilder does). For that:
* If you are using debhelper, you might want to use options -a and -i
for dh_* commands so that they do not act on packages they do not
have to act.
* Also, if you are using dh, the (independently) optional targets
override_dh_foo-arch and override_dh_foo-indep (for several values
of "foo") may be useful to write a debian/rules which behaves exactly
as desired.
After checking that both "dpkg-buildpackage -A" and "dpkg-buildpackage -B"
work properly, this package will be suitable to be uploaded in
source-only form if you wish (you might want to try it).
Thanks.
--- End Message ---
--- Begin Message ---
Source: qiime
Source-Version: 1.9.1+dfsg-1
We believe that the bug you reported is fixed in the latest version of
qiime, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated qiime package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 25 Nov 2015 17:07:33 +0100
Source: qiime
Binary: qiime qiime-doc qiime-data
Architecture: source all amd64
Version: 1.9.1+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
qiime - Quantitative Insights Into Microbial Ecology
qiime-data - Quantitative Insights Into Microbial Ecology (supporting data)
qiime-doc - Quantitative Insights Into Microbial Ecology (tutorial)
Closes: 758987 806101
Changes:
qiime (1.9.1+dfsg-1) unstable; urgency=medium
.
* Take over changes from BioLinux for new upstream version
* adapt d/watch and get-orig-source target to new uscan
* cme fix dpkg-control
* Remove denoiser from d/control since there is no such package
any more
* DEP5 fixes
* Add lintian override for false positive about JS without source
* Enable building arch independent packages separately
Closes: #806101
* This upload also
Closes: #758987
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qiime_1.9.1+dfsg.orig.tar.xz
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qiime_1.9.1+dfsg-1.debian.tar.xz
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qiime-data_1.9.1+dfsg-1_all.deb
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qiime-doc_1.9.1+dfsg-1_all.deb
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