Your message dated Wed, 09 Dec 2015 16:57:51 +0000
with message-id <[email protected]>
and subject line Bug#807150: fixed in gubbins 1.4.4-1
has caused the Debian Bug report #807150,
regarding gubbins: FTBFS on i386: Invalid ALN file for multiple lines per seq
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
807150: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=807150
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: gubbins
Version: 1.4.3-1
Severity: important
Justification: fails to build from source
The i386 build of gubbins failed:
FAIL: run_all_tests
============================================================================
Testsuite summary for gubbins 1.4.3
============================================================================
# TOTAL: 1
# PASS: 0
# SKIP: 0
# XFAIL: 0
# FAIL: 1
# XPASS: 0
# ERROR: 0
============================================================================
See src/test-suite.log
I was able to reproduce the error in an i386 chroot, yielding the following
details:
FAIL: run_all_tests
===================
Running suite(s): Creating_SNP_Sites
Parsing a phylip file
Parsing a vcf file
checking branch sequences
Checking the gubbins functionality
snp_searching
94%: Checks: 39, Failures: 2, Errors: 0
../tests/check_snp_sites.c:73:F:snp_sites:valid_alignment_with_multiple_lines_per_sequence:0:
Invalid ALN file for multiple lines per seq
../tests/check_snp_sites.c:85:F:snp_sites:two_sequences:0: Invalid ALN file
for multiple lines per seq
FAIL run_all_tests (exit status: 1)
Could you please take a look?
Thanks!
--- End Message ---
--- Begin Message ---
Source: gubbins
Source-Version: 1.4.4-1
We believe that the bug you reported is fixed in the latest version of
gubbins, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated gubbins package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 09 Dec 2015 17:07:44 +0100
Source: gubbins
Binary: gubbins
Architecture: source amd64
Version: 1.4.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
gubbins - phylogenetic analysis of genome sequences
Closes: 807150
Changes:
gubbins (1.4.4-1) unstable; urgency=medium
.
* New upstream version
Closes: #807150
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