Your message dated Thu, 10 Dec 2015 16:02:25 +0000
with message-id <[email protected]>
and subject line Bug#798277: fixed in ncbi-blast+ 2.2.31-1
has caused the Debian Bug report #798277,
regarding ncbi-blast+: allow parallel building
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
798277: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=798277
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:ncbi-blast+
Severity: wishlist
Tags: patch
ncbi-blast+ is a package that takes a lot of time to build on many
architectures, more than 10 hours on some of supported ones, it would
be nice to allow parallel building to make use of multi-core systems.
Attached is a patch that make the parallel process honors
DEB_BUILD_OPTIONS=parallel=n environmental variable.
Regards,
Aron
diff --git a/debian/rules b/debian/rules
index 8403437..c160df1 100755
--- a/debian/rules
+++ b/debian/rules
@@ -4,6 +4,10 @@
# Uncomment this to turn on verbose mode.
#export DH_VERBOSE=1
+NUMJOBS=1
+ifneq (,$(filter parallel=%,$(DEB_BUILD_OPTIONS)))
+ NUMJOBS = $(patsubst parallel=%,%,$(filter
parallel=%,$(DEB_BUILD_OPTIONS)))
+endif
DEB_CONFIGURE_EXTRA_FLAGS=--with-dll --with-mt --without-autodep \
--without-makefile-auto-update --with-flat-makefile --without-caution \
@@ -42,7 +46,7 @@ override_dh_auto_configure:
override_dh_auto_build:
cd c++/BUILD/build && \
- make -f Makefile.flat all_projects="$(proj)"
+ make -j$(NUMJOBS) -f Makefile.flat all_projects="$(proj)"
# make all_r
--- End Message ---
--- Begin Message ---
Source: ncbi-blast+
Source-Version: 2.2.31-1
We believe that the bug you reported is fixed in the latest version of
ncbi-blast+, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Olivier Sallou <[email protected]> (supplier of updated ncbi-blast+ package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 10 Dec 2015 13:37:03 +0100
Source: ncbi-blast+
Binary: ncbi-blast+ ncbi-blast+-legacy
Architecture: source all amd64
Version: 2.2.31-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Olivier Sallou <[email protected]>
Description:
ncbi-blast+ - next generation suite of BLAST sequence search tools
ncbi-blast+-legacy - NCBI Blast legacy call script
Closes: 793263 798277
Changes:
ncbi-blast+ (2.2.31-1) unstable; urgency=medium
.
* New upstream release
* Allow parallel build (Closes: #798277). Thanks to Aron Xu <[email protected]>
* GCC break fix (recompile with gcc5, Closes: #793263).
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