Your message dated Mon, 28 Dec 2015 07:49:04 +0000
with message-id <[email protected]>
and subject line Bug#809076: fixed in bowtie2 2.2.6-2
has caused the Debian Bug report #809076,
regarding bowtie2: FTBFS when CPPFLAGS contains spaces
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
809076: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=809076
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: bowtie2
Version: 2.2.6-1
Severity: serious
User: [email protected]
Usertags: timestamps fileordering
X-Debbugs-Cc: [email protected]
Your package fails to build in current sid.
This usually means that you should quote CPPFLAGS before passing it
over.
Tail of the build log:
ld --parallel
dh_testdir -O--parallel
dh_auto_configure -O--parallel
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/bowtie2-2.2.6'
dh_auto_build -- EXTRA_FLAGS=-Wl,-z,relro CPPFLAGS=-Wdate-time
-D_FORTIFY_SOURCE=2 WITH_TBB=1
make -j18 EXTRA_FLAGS=-Wl,-z,relro CPPFLAGS=-Wdate-time
-D_FORTIFY_SOURCE=2 WITH_TBB=1
make: invalid option -- 'D'
make: invalid option -- '_'
make: invalid option -- 'F'
Usage: make [options] [target] ...
Options:
-b, -m Ignored for compatibility.
-B, --always-make Unconditionally make all targets.
-C DIRECTORY, --directory=DIRECTORY
Change to DIRECTORY before doing anything.
-d Print lots of debugging information.
--debug[=FLAGS] Print various types of debugging information.
-e, --environment-overrides
Environment variables override makefiles.
--eval=STRING Evaluate STRING as a makefile statement.
-f FILE, --file=FILE, --makefile=FILE
Read FILE as a makefile.
-h, --help Print this message and exit.
-i, --ignore-errors Ignore errors from recipes.
-I DIRECTORY, --include-dir=DIRECTORY
Search DIRECTORY for included makefiles.
-j [N], --jobs[=N] Allow N jobs at once; infinite jobs with no arg.
-k, --keep-going Keep going when some targets can't be made.
-l [N], --load-average[=N], --max-load[=N]
Don't start multiple jobs unless load is below N.
-L, --check-symlink-times Use the latest mtime between symlinks and target.
-n, --just-print, --dry-run, --recon
Don't actually run any recipe; just print them.
-o FILE, --old-file=FILE, --assume-old=FILE
Consider FILE to be very old and don't remake it.
-O[TYPE], --output-sync[=TYPE]
Synchronize output of parallel jobs by TYPE.
-p, --print-data-base Print make's internal database.
-q, --question Run no recipe; exit status says if up to date.
-r, --no-builtin-rules Disable the built-in implicit rules.
-R, --no-builtin-variables Disable the built-in variable settings.
-s, --silent, --quiet Don't echo recipes.
-S, --no-keep-going, --stop
Turns off -k.
-t, --touch Touch targets instead of remaking them.
--trace Print tracing information.
-v, --version Print the version number of make and exit.
-w, --print-directory Print the current directory.
--no-print-directory Turn off -w, even if it was turned on implicitly.
-W FILE, --what-if=FILE, --new-file=FILE, --assume-new=FILE
Consider FILE to be infinitely new.
--warn-undefined-variables Warn when an undefined variable is referenced.
This program built for x86_64-pc-linux-gnu
Report bugs to <[email protected]>
dh_auto_build: make -j18 EXTRA_FLAGS=-Wl,-z,relro CPPFLAGS=-Wdate-time
-D_FORTIFY_SOURCE=2 WITH_TBB=1 returned exit code 2
debian/rules:21: recipe for target 'override_dh_auto_build' failed
make[1]: *** [override_dh_auto_build] Error 2
make[1]: Leaving directory '/build/bowtie2-2.2.6'
debian/rules:18: recipe for target 'build' failed
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
--
regards,
Mattia Rizzolo
GPG Key: 66AE 2B4A FCCF 3F52 DA18 4D18 4B04 3FCD B944 4540 .''`.
more about me: http://mapreri.org : :' :
Launchpad user: https://launchpad.net/~mapreri `. `'`
Debian QA page: https://qa.debian.org/developer.php?login=mattia `-
signature.asc
Description: PGP signature
--- End Message ---
--- Begin Message ---
Source: bowtie2
Source-Version: 2.2.6-2
We believe that the bug you reported is fixed in the latest version of
bowtie2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated bowtie2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 28 Dec 2015 08:23:51 +0100
Source: bowtie2
Binary: bowtie2 bowtie2-examples
Architecture: source amd64 all
Version: 2.2.6-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
bowtie2 - ultrafast memory-efficient short read aligner
bowtie2-examples - Examples for bowtie2
Closes: 809076
Changes:
bowtie2 (2.2.6-2) unstable; urgency=medium
.
[ Charles Plessy ]
* d/rules: quote variables contents passed to Makefile, closes: #809076.
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