Your message dated Tue, 29 Dec 2015 06:52:22 +0000
with message-id <[email protected]>
and subject line Bug#809187: fixed in transdecoder 2.0.1+dfsg-2
has caused the Debian Bug report #809187,
regarding transdecoder: please make the build reproducible
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
809187: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=809187
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: transdecoder
Version: 2.0.1+dfsg-1
Severity: wishlist
Tags: patch
User: [email protected]
Usertags: randomness
X-Debbugs-Cc: [email protected]
Hi,
Whilst working on the "reproducible builds" effort [0], we noticed that
transdecoder could not be built reproducibly.
Patch attached.
[0] https://wiki.debian.org/ReproducibleBuilds
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` [email protected] / chris-lamb.co.uk
`-
--- a/debian/patches/reproducible-build 1970-01-01 01:00:00.000000000 +0100
--- b/debian/patches/reproducible-build 2015-12-28 03:17:11.152591794 +0100
@@ -0,0 +1,16 @@
+--- transdecoder-2.0.1+dfsg.orig/util/cufflinks_gtf_to_bed.pl
++++ transdecoder-2.0.1+dfsg/util/cufflinks_gtf_to_bed.pl
+@@ -68,11 +68,11 @@ main: {
+
+ my $genes_href = $genome_trans_to_coords{$scaff};
+
+- foreach my $gene_id (keys %$genes_href) {
++ foreach my $gene_id (sort keys %$genes_href) {
+
+ my $trans_href = $genes_href->{$gene_id};
+
+- foreach my $trans_id (keys %$trans_href) {
++ foreach my $trans_id (sort keys %$trans_href) {
+
+ my $coords_href = $trans_href->{$trans_id};
+
--- a/debian/patches/series 2015-12-28 03:15:02.514567260 +0100
--- b/debian/patches/series 2015-12-28 03:17:07.500534389 +0100
@@ -1,2 +1,3 @@
cd-hit-est-rename
fix-whatis
+reproducible-build
--- End Message ---
--- Begin Message ---
Source: transdecoder
Source-Version: 2.0.1+dfsg-2
We believe that the bug you reported is fixed in the latest version of
transdecoder, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated transdecoder package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 28 Dec 2015 08:26:27 +0100
Source: transdecoder
Binary: transdecoder transdecoder-doc
Architecture: source all
Version: 2.0.1+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
transdecoder - find coding regions within RNA transcript sequences
transdecoder-doc - find coding regions within transcripts
Closes: 809187
Changes:
transdecoder (2.0.1+dfsg-2) unstable; urgency=medium
.
[ Andreas Tille ]
* Slightly enhanced short description
* Lintian override for false positive package-contains-timestamped-gzip
* DEP3 headers
.
[ Charles Plessy ]
* Make output reproducible.
Closes: #809187
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