Your message dated Wed, 03 Feb 2016 13:01:19 +0000
with message-id <[email protected]>
and subject line Bug#800737: fixed in ruby-crb-blast 0.6.4-1
has caused the Debian Bug report #800737,
regarding ITP: ruby-crb-blast -- Run conditional reciprocal best blast
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
800737: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=800737
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: wnpp
Owner: "Debian Ruby Team" <[email protected]>
Severity: wishlist
X-Debbugs-CC: [email protected]
* Package name : ruby-crb-blast
Version : 0.6.4
Upstream Author : Chris Boursnell & Richard Smith-Unna
* URL : https://github.com/cboursnell/crb-blast
* License : MIT
Programming Lang: Ruby
Description : Run conditional reciprocal best blast
CRB-BLAST is a novel method for finding orthologs between one set of
sequences and another. This is particularly useful in genome and
transcriptome annotation.
CRB-BLAST initially performs a standard reciprocal best BLAST. It does this
by performing BLAST alignments of query->target and target->query.
Reciprocal best BLAST hits are those where the best match for any given
query sequence in the query->target alignment is also the best hit of the
match in the reverse (target->query) alignment.
Reciprocal best BLAST is a very conservative way to assign orthologs. The
main innovation in CRB-BLAST is to learn an appropriate e-value cutoff to
apply to each pairwise alignment by taking into account the overall
relatedness of the two datasets being compared. This is done by fitting a
function to the distribution of alignment e-values over sequence lengths.
The function the e-value cutoff for a sequence of given length.
This package is a dependency for 'transrate'
This package will be maintained as part of the Debian Ruby packaging team.
--- End Message ---
--- Begin Message ---
Source: ruby-crb-blast
Source-Version: 0.6.4-1
We believe that the bug you reported is fixed in the latest version of
ruby-crb-blast, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <[email protected]> (supplier of updated ruby-crb-blast
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 19 Sep 2015 21:56:00 -0700
Source: ruby-crb-blast
Binary: ruby-crb-blast
Architecture: source all
Version: 0.6.4-1
Distribution: sid
Urgency: medium
Maintainer: Debian Ruby Extras Maintainers
<[email protected]>
Changed-By: Michael R. Crusoe <[email protected]>
Description:
ruby-crb-blast - Run conditional reciprocal best blast
Closes: 800737
Changes:
ruby-crb-blast (0.6.4-1) unstable; urgency=medium
.
* Initial release (Closes: #800737)
Checksums-Sha1:
4fc2ff8316dd05a79b03ade8c22cbc7503ed9e63 2187 ruby-crb-blast_0.6.4-1.dsc
c7ca876ee6a450788a20376b8cc2e9e41f4d0f14 36354 ruby-crb-blast_0.6.4.orig.tar.gz
42c8d14ec252adafe0a22b9f8e56f71bc66b02bf 3204
ruby-crb-blast_0.6.4-1.debian.tar.xz
6872f91cecdb9d18944345e1b5e1adc66ac9f35d 10308 ruby-crb-blast_0.6.4-1_all.deb
Checksums-Sha256:
0c694c990dab40985364a65e2be4e407402f33f5ccd0546c17213876f80d575d 2187
ruby-crb-blast_0.6.4-1.dsc
1720ac16c48a304e9d8f925fbede9f7d4b578043d6b7e3c611e4693bfc7e1ebd 36354
ruby-crb-blast_0.6.4.orig.tar.gz
2ee08373fd21a0163f754c4d437d384c6a90e2a76e5d0f57d4f4bfc35b3d0076 3204
ruby-crb-blast_0.6.4-1.debian.tar.xz
a7f23383ea3e559b49e4cb34e4f6b3024ce82a9400214f0708e9b4a742088f2e 10308
ruby-crb-blast_0.6.4-1_all.deb
Files:
5acc446f7d3d8ec9c7ad209841797159 2187 ruby optional ruby-crb-blast_0.6.4-1.dsc
31c21828bf728f999c3c9b7e109c811a 36354 ruby optional
ruby-crb-blast_0.6.4.orig.tar.gz
a40b84b4e5b82407963264bc196db695 3204 ruby optional
ruby-crb-blast_0.6.4-1.debian.tar.xz
f5e07e8743c4cd3b7875680d3e17e189 10308 ruby optional
ruby-crb-blast_0.6.4-1_all.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1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=LnFb
-----END PGP SIGNATURE-----
--- End Message ---
