Your message dated Mon, 25 Apr 2016 22:31:31 +0000
with message-id <[email protected]>
and subject line Bug#822295: fixed in staden 2.0.0+b10-5
has caused the Debian Bug report #822295,
regarding staden: fix implicit pointer conversions
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
822295: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=822295
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: staden
Version: 2.0.0+b10-4
Severity: important
Tags: patch
User: [email protected]
Usertags: origin-ubuntu xenial ubuntu-patch
Dear Maintainer,
staden currently has a number of implicit pointer conversions that can cause
serious issues with the package, especially on 64-bit architectures. You can
see the build log check errors here:
https://qa.debian.org/bls/packages/s/staden.html
In Ubuntu, the attached patch was applied to achieve the following:
* debian/patches/include_xalloc.patch: Include "xalloc.h" in a few more
files that use xcalloc.
Thanks for considering the patch.
Logan Rosen
-- System Information:
Debian Release: stretch/sid
APT prefers xenial-updates
APT policy: (500, 'xenial-updates'), (500, 'xenial-security'), (500,
'xenial'), (100, 'xenial-backports')
Architecture: amd64 (x86_64)
Kernel: Linux 4.4.0-18-generic (SMP w/2 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
diff -Nru staden-2.0.0+b10/debian/patches/include_xalloc.patch staden-2.0.0+b10/debian/patches/include_xalloc.patch
--- staden-2.0.0+b10/debian/patches/include_xalloc.patch 1970-01-01 00:00:00.000000000 +0000
+++ staden-2.0.0+b10/debian/patches/include_xalloc.patch 2016-01-05 08:45:42.000000000 +0000
@@ -0,0 +1,31 @@
+Description: Include "xalloc.h" in a few more files that use xcalloc
+Author: Colin Watson <[email protected]>
+Forwarded: no
+Last-Update: 2016-01-05
+
+Index: b/hetins/hetins.c
+===================================================================
+--- a/hetins/hetins.c
++++ b/hetins/hetins.c
+@@ -9,6 +9,8 @@
+ #include <io_lib/Read.h>
+ #include <io_lib/traceType.h>
+
++#include "xalloc.h"
++
+ #define FULL_TEST 2
+ #define TEST 1
+
+Index: b/stops/stops.c
+===================================================================
+--- a/stops/stops.c
++++ b/stops/stops.c
+@@ -13,6 +13,8 @@
+ #include <io_lib/Read.h>
+ #include <io_lib/misc.h>
+
++#include "xalloc.h"
++
+ void do_nothing(void) {}
+
+ /* johnt 1/6/99 must explicitly import globals from DLLs with Visual C++*/
diff -Nru staden-2.0.0+b10/debian/patches/series staden-2.0.0+b10/debian/patches/series
--- staden-2.0.0+b10/debian/patches/series 2016-02-23 08:36:00.000000000 +0000
+++ staden-2.0.0+b10/debian/patches/series 2016-03-26 20:56:21.000000000 +0000
@@ -8,3 +8,4 @@
enable_setting_stadenroot.patch
spelling.patch
cope_with_modern_windowmanager.patch
+include_xalloc.patch
--- End Message ---
--- Begin Message ---
Source: staden
Source-Version: 2.0.0+b10-5
We believe that the bug you reported is fixed in the latest version of
staden, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated staden package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 25 Apr 2016 23:43:40 +0200
Source: staden
Binary: staden staden-common
Architecture: source all amd64
Version: 2.0.0+b10-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
staden - DNA sequence assembly (Gap4/Gap5), editing and analysis tools
staden-common - Architecture independent files for Staden
Closes: 822295
Changes:
staden (2.0.0+b10-5) unstable; urgency=medium
.
* Apply patch for Ubuntu by Collin Watson
Closes: #822295
* cme fix dpkg-control
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