Your message dated Fri, 08 Jul 2016 23:50:42 +0000
with message-id <[email protected]>
and subject line Bug#829395: Removed package(s) from unstable
has caused the Debian Bug report #829395,
regarding RM: python-cobra [hurd-i386] -- RoM; FTBFS; platform
to be marked as done.
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--
829395: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=829395
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: python-cobra
Version: 0.4.1-2
Severity: important
Hi,
python-cobra FTBFS on hurd-i386, but the previous version built there:
https://buildd.debian.org/status/fetch.php?pkg=python-cobra&arch=hurd-i386&ver=0.4.1-2&stamp=1464980277
test_double_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ...
ERROR
Exception AttributeError: "'CobraDeletionPool' object has no attribute
'processes'" in <bound method CobraDeletionPool.__del__ of
<cobra.flux_analysis.deletion_worker.CobraDeletionPool object at 0x530628c>>
ignored
======================================================================
ERROR: test_double_gene_deletion
(cobra.test.flux_analysis.TestCobraFluxAnalysis)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/«PKGBUILDDIR»/cobra/test/flux_analysis.py", line 170, in
test_double_gene_deletion
solution = double_gene_deletion(cobra_model, gene_list1=genes)
File "/«PKGBUILDDIR»/cobra/flux_analysis/double_deletion.py", line 283, in
double_gene_deletion
gene_id_to_result, **kwargs)
File "/«PKGBUILDDIR»/cobra/flux_analysis/double_deletion.py", line 403, in
_double_gene_deletion_fba
solver=solver, **kwargs) as pool:
File "/«PKGBUILDDIR»/cobra/flux_analysis/deletion_worker.py", line 66, in
__init__
self.job_queue = Queue() # format is (indexes, job_label)
File "/usr/lib/python2.7/multiprocessing/__init__.py", line 217, in Queue
from multiprocessing.queues import Queue
File "/usr/lib/python2.7/multiprocessing/queues.py", line 48, in <module>
from .synchronize import Lock, BoundedSemaphore, Semaphore, Condition
File "/usr/lib/python2.7/multiprocessing/synchronize.py", line 59, in <module>
" function, see issue 3770.")
ImportError: This platform lacks a functioning sem_open implementation,
therefore, the required synchronization primitives needed will not function,
see issue 3770.
----------------------------------------------------------------------
Ran 129 tests in 6.040s
FAILED (errors=1, skipped=11)
If this is not trivially fixable, please request decrufting of the
outdated binary packages:
Control: reassign -1 ftp.debian.org
Control: severity -1 normal
Control: retitle -1 RM: python-cobra [hurd-i386] -- RoM; FTBFS; platform lacks
a functioning sem_open implementation
Andreas
--- End Message ---
--- Begin Message ---
We believe that the bug you reported is now fixed; the following
package(s) have been removed from unstable:
python-cobra | 0.4.0b6-1 | hurd-i386
python3-cobra | 0.4.0b6-1 | hurd-i386
------------------- Reason -------------------
RoM; FTBFS; platform
----------------------------------------------
Note that the package(s) have simply been removed from the tag
database and may (or may not) still be in the pool; this is not a bug.
The package(s) will be physically removed automatically when no suite
references them (and in the case of source, when no binary references
it). Please also remember that the changes have been done on the
master archive and will not propagate to any mirrors until the next
dinstall run at the earliest.
Packages are usually not removed from testing by hand. Testing tracks
unstable and will automatically remove packages which were removed
from unstable when removing them from testing causes no dependency
problems. The release team can force a removal from testing if it is
really needed, please contact them if this should be the case.
Bugs which have been reported against this package are not automatically
removed from the Bug Tracking System. Please check all open bugs and
close them or re-assign them to another package if the removed package
was superseded by another one.
The version of this package that was in Debian prior to this removal
can still be found using http://snapshot.debian.org/.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected].
The full log for this bug can be viewed at https://bugs.debian.org/829395
This message was generated automatically; if you believe that there is
a problem with it please contact the archive administrators by mailing
[email protected].
Debian distribution maintenance software
pp.
Scott Kitterman (the ftpmaster behind the curtain)
--- End Message ---
