Your message dated Fri, 22 Jul 2016 09:51:41 +0000
with message-id <[email protected]>
and subject line Bug#832068: fixed in mash 1.1-3
has caused the Debian Bug report #832068,
regarding mash: FTBFS on kfreebsd-amd64: /usr/lib/libcapnp.a: error adding
symbols: Bad value
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact [email protected]
immediately.)
--
832068: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=832068
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: mash
Version: 1.1-2
Severity: important
Justification: fails to build from source
The kfreebsd-amd64 build of mash failed:
g++ -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security
-O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time
-D_FORTIFY_SOURCE=2 -o mash libmash.a /usr/lib/libcapnp.a /usr/lib/libkj.a
-L/usr/lib -lgsl -lgslcblas -lstdc++ -lz -lm -lpthread -fPIE -pie -Wl,-z,relro
-Wl,-z,now
/usr/bin/ld: /usr/lib/libcapnp.a(layout.o): relocation R_X86_64_32S against
`.rodata' can not be used when making a shared object; recompile with -fPIC
/usr/lib/libcapnp.a: error adding symbols: Bad value
collect2: error: ld returned 1 exit status
Makefile:35: recipe for target 'mash' failed
Please fix it to link dynamically against libcapnp (and libkj), which
is best practice anyway.
Thanks!
-- System Information:
Debian Release: stretch/sid
APT prefers testing
APT policy: (500, 'testing'), (500, 'stable'), (300, 'unstable')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 4.6.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: mash
Source-Version: 1.1-3
We believe that the bug you reported is fixed in the latest version of
mash, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sascha Steinbiss <[email protected]> (supplier of updated mash package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 22 Jul 2016 08:17:49 +0000
Source: mash
Binary: mash libmash-dev mash-doc
Architecture: source amd64 all
Version: 1.1-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Sascha Steinbiss <[email protected]>
Description:
libmash-dev - development headers and static library for Mash
mash - fast genome and metagenome distance estimation using MinHash
mash-doc - documentation for Mash
Closes: 832068
Changes:
mash (1.1-3) unstable; urgency=medium
.
* Link shared external libcapnp and libkj.
This fixes an FTBFS on kfreebsd-amd64 (Closes: #832068)
Thanks to Aaron M. Ucko for the hint.
Checksums-Sha1:
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Files:
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5ecd39ef21ddb3efa5f02a8a72812f30 2157532 science optional
mash_1.1-3.debian.tar.xz
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mash-dbgsym_1.1-3_amd64.deb
5dc7964a8a946d0bb7268cde716d5ba1 71966 doc optional mash-doc_1.1-3_all.deb
2e6f48586482913392670ac7d172c751 121316 science optional mash_1.1-3_amd64.deb
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--- End Message ---
