Your message dated Sun, 09 Oct 2016 16:40:50 +0000
with message-id <[email protected]>
and subject line Bug#840156: fixed in lambda-align 1.0.0-2
has caused the Debian Bug report #840156,
regarding lambda-align: please make the build reproducible
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
840156: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=840156
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: lambda-align
Version: 1.0.0-1
Severity: wishlist
Tags: patch
User: [email protected]
Usertags: buildpath environment
X-Debbugs-Cc: [email protected]
Hi,
Whilst working on the Reproducible Builds effort [0], we noticed
that lambda-align could not be built reproducibly.
Patch attached.
[0] https://reproducible-builds.org/
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` [email protected] / chris-lamb.co.uk
`-
--- a/debian/rules 2016-10-08 23:17:09.952583874 +0100
--- b/debian/rules 2016-10-08 23:48:38.276186062 +0100
@@ -11,8 +11,11 @@
override_dh_installman:
./build/bin/lambda --export-help man \
+ | sed -r 's/(number of threads.*) Default:.*/\1/g' \
| sed -r 's/\(Git commit +\)//g' > lambda.1
./build/bin/lambda_indexer --export-help man \
+ | sed -r 's/(number of threads.*) Default:.*/\1/g' \
+ | sed -r 's/(defaults to working directory.*) Default:.*/\1/g' \
| sed -r 's/\(Git commit +\)//g' > lambda_indexer.1
dh_installman --
--- End Message ---
--- Begin Message ---
Source: lambda-align
Source-Version: 1.0.0-2
We believe that the bug you reported is fixed in the latest version of
lambda-align, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sascha Steinbiss <[email protected]> (supplier of updated lambda-align package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 09 Oct 2016 15:06:33 +0000
Source: lambda-align
Binary: lambda-align
Architecture: source amd64
Version: 1.0.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Sascha Steinbiss <[email protected]>
Description:
lambda-align - Local Aligner for Massive Biological DatA
Closes: 840028 840156
Changes:
lambda-align (1.0.0-2) unstable; urgency=medium
.
* Set versioned dependency for libseqan2-dev.
Thanks to Aaron M. Ucko for the hint.
Closes: #840028
* Make build reproducible.
Thanks to Chris Lamb for the patch.
Closes: #840156
* Force linking of librt and libpthread as a workaround until
#840030 gets fixed in libseqan2-dev.
This fixes builds on kFreeBSD, thanks to Aaron M. Ucko.
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