Your message dated Mon, 12 Dec 2016 16:03:54 +0000
with message-id <[email protected]>
and subject line Bug#847943: fixed in dascrubber 0~20160601-2
has caused the Debian Bug report #847943,
regarding dascrubber: FTBFS when linked with -Wl,--as-needed
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
847943: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=847943
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: dascrubber
Version: 0~20160601-1
Severity: wishlist
Tags: patch
Hi Maintainer
Dascrubber FTBFS when linked with -Wl,--as-needed, the default in Ubuntu.
The attached updated compiler-flags.patch fixes the build by adding
libraries in LIBS instead of LDFLAGS which changes the order they appear
on the gcc command line.
Regards
Graham
Description: Allow additional compiler and linker flags
Author: Afif Elghraoui <[email protected]>
Forwarded: no
Last-Update: 2016-10-20
Author: Graham Inggs <[email protected]>
last-Update: 2016-12-10
--- a/Makefile
+++ b/Makefile
@@ -1,16 +1,17 @@
DEST_DIR = ~/bin
-CFLAGS = -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing
+CFLAGS += -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing
+LIBS = -lm
ALL = DASqv DAStrim
all: $(ALL)
DASqv: DASqv.c align.c align.h DB.c DB.h QV.c QV.h
- gcc $(CFLAGS) -o DASqv DASqv.c align.c DB.c QV.c -lm
+ $(CC) $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -o DASqv DASqv.c align.c DB.c QV.c $(LIBS)
DAStrim: DAStrim.c align.c align.h DB.c DB.h QV.c QV.h
- gcc $(CFLAGS) -o DAStrim DAStrim.c align.c DB.c QV.c -lm
+ $(CC) $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -o DAStrim DAStrim.c align.c DB.c QV.c $(LIBS)
clean:
rm -f $(ALL)
--- End Message ---
--- Begin Message ---
Source: dascrubber
Source-Version: 0~20160601-2
We believe that the bug you reported is fixed in the latest version of
dascrubber, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated dascrubber package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 12 Dec 2016 16:38:36 +0100
Source: dascrubber
Binary: dascrubber
Architecture: source amd64
Version: 0~20160601-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
dascrubber - alignment-based scrubbing pipeline for DNA sequencing reads
Closes: 847943
Changes:
dascrubber (0~20160601-2) unstable; urgency=medium
.
* Team upload.
* Enable build when linked with -Wl, --as-needed (Thanks for the patch to
Graham Inggs <[email protected]>)
Closes: #847943
* Fake watch file
* debhelper 10
* hardening=+all
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