Your message dated Thu, 30 Mar 2017 11:48:49 +0000 with message-id <[email protected]> and subject line Bug#859091: fixed in mapdamage 2.0.6+dfsg-2 has caused the Debian Bug report #859091, regarding mapdamage: Missing dependencies prevent proper functionality to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 859091: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=859091 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: mapdamage Severity: grave Tags: patch Justification: renders package unusable Hi, when Nadiya Sitdykova tried to create an autopkgtest it turned out that several dependencies were missing. The missing dependencies to run documented mapdamage tests successfully are: python-pysam, r-cran-inline, r-cran-ggplot2, r-cran-gam, r-cran-rcpp, r-cran-rcppgsl, libopenblas-dev | libblas-dev | libatlas-base-dev | libblas.so, libopenblas-dev | liblapack-dev | libatlas-base-dev | liblapack.so A working patch is commited to packaging Git. Kind regards Andreas. -- System Information: Debian Release: 8.7 APT prefers stable-updates APT policy: (500, 'stable-updates'), (500, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 3.16.0-4-amd64 (SMP w/1 CPU core) Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system)
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--- Begin Message ---Source: mapdamage Source-Version: 2.0.6+dfsg-2 We believe that the bug you reported is fixed in the latest version of mapdamage, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Nadiya Sitdykova <[email protected]> (supplier of updated mapdamage package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Thu, 23 Mar 2017 21:34:41 -0700 Source: mapdamage Binary: mapdamage Architecture: source all Version: 2.0.6+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Nadiya Sitdykova <[email protected]> Description: mapdamage - tracking and quantifying damage patterns in ancient DNA sequences Closes: 848326 859090 859091 Changes: mapdamage (2.0.6+dfsg-2) unstable; urgency=medium . * Team upload . [ Andreas Tille ] * Spelling . [ Nadiya Sitdykova ] * Add simple tests for examples * Move pysam dependency from tests/control to control as it's needed not only for test, but for package * Add test checking stdin redirect * Add simple test to demonstrate the problems with installing r-cran-rcppgsl package * Edit path to seqtk in composition.py Closes: #859090 * Fix typo in tests/control * Add patch to fix quantile call to remove NA and NaNs * Add dependency providing liblapack.so and libblas.so Closes: #859091 * Add file with reference containing all types of nucleotides * Add information how to check R libraries and what to do in case of errors to README.test * Provide tests for examples from documentation Closes: #848326 * Fixed typo in README.test Checksums-Sha1: 2f2d102bc888e5123243e27350074cd2c823467a 2090 mapdamage_2.0.6+dfsg-2.dsc a77076da7aa059f69c41fdb7c898f4c1eedcb239 6928 mapdamage_2.0.6+dfsg-2.debian.tar.xz 373003c4959296c5c84b60cb09661187b3f54325 38800 mapdamage_2.0.6+dfsg-2_all.deb b9633ab8a3dbdd144d71597b02ebff511b71fe66 6027 mapdamage_2.0.6+dfsg-2_amd64.buildinfo Checksums-Sha256: 154f033951fd2dd83e89b49cbc4f3aa7852ea4df1ec412c1a1d103039d1cd597 2090 mapdamage_2.0.6+dfsg-2.dsc 4fe17e581cc172d8feff429be2caed6a29db9ee777f03011dddbc1366c672cb8 6928 mapdamage_2.0.6+dfsg-2.debian.tar.xz 006f25238ce436c5c0b595bdb03cca26464f6beeb6c4c847ec78a358c5c38e9b 38800 mapdamage_2.0.6+dfsg-2_all.deb 4a934164110d0ae8f3fa7a43b51ca982bb3da369b3e5c042358c61770c84f458 6027 mapdamage_2.0.6+dfsg-2_amd64.buildinfo Files: 62f591c0487e038c18cbb5c35ffe34f5 2090 science optional mapdamage_2.0.6+dfsg-2.dsc b7af5a220b8f7549c14e4ff4c21c91bd 6928 science optional mapdamage_2.0.6+dfsg-2.debian.tar.xz aff21d92226b52602d776d344588dc7e 38800 science optional mapdamage_2.0.6+dfsg-2_all.deb f901d23ec7c23b93aad78d869e0f270d 6027 science optional mapdamage_2.0.6+dfsg-2_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAljc6wMOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtF6/Q//bbKUGq8u4sAldhFqGRGNAPZmSlgYD2nSJn1e wRJ9Vj1fEuBFMInCZdtQrf6EK/HrrATzEUMOgtCPWpZE6zCCyLPJPjd46gKRgkRH 7Ut+uypsohPaqdmY9JgqW8758mUnLZw5s+Kq4GkogDmUlDweUMs6mxSaGUpZX+OC b1HF6YdYHqTTvyfuFF6rSBQnAn5DA8jrVxkEq90NpzWaLmZ5DcZluCJomOTRfai1 wr2RG2l1h9FEoppA7oHbN9nXsKU+BYIEPCEBDz/SE/LHP+krBmnGX7UBFz+cO8AV yYymLL/wtn9jrZIwSAT0zcnRm4Vrsd2jYonHVJnt5osk1Yae+9rZvSjXINtMngZ9 lRj8m1lJDmWvzA4p2wc3gz8MBpHCumv/2/jXzYAzGSAuAvwIupq1+6rIu0DOXu/C tUUq4f5KjawyPmqv5leby093SPJnkFPwyH1ylxcEdBE7KmVPuI8trs2XRkv6R8Fi A1uF9WBki8xNMCK3wEdEWOXnvUwQfiOOdDuPa+aNHiSWSEM6nRpi5Ppx4pNlJHYp +K45DLCvV8asEPbg2aOooEVHdiHU10ECtQMIKYtOLWDYDISu2XKLYG9Xo1pNOxXw EgDonNDrBgwEHclvMoQKGtve/7vEjiu1tXMyUzJo7xneEETAP+5UkSlnyGtUxYhj mVbcSZY= =69N+ -----END PGP SIGNATURE-----
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