Your message dated Fri, 25 Aug 2017 21:08:19 +0000 with message-id <[email protected]> and subject line Bug#865608: fixed in jellyfish 2.2.6-2 has caused the Debian Bug report #865608, regarding jellyfish shouldn't disable PIE to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 865608: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=865608 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Source: jellyfish Version: 2.2.6-1 Severity: normal Tags: patch With gcc in stretch defaulting to PIE, hardening=+all,-pie changed semantics from "enable hardening but not PIE" to "enable all hardening and explicitely disable the default PIE". The latter is usually not intended. The -pie in hardening flags was in some cases required in pre-stretch releases to avoid build failures caused by (incorrectly) passing -fPIE to the compiler when building shared libraries or plugins. This problem does no longer exist. Please consider applying the following patch: --- debian/rules.old 2017-06-23 04:50:02.000000000 +0000 +++ debian/rules 2017-06-23 04:50:07.000000000 +0000 @@ -3,7 +3,7 @@ DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}') build3vers := $(shell py3versions -sv) -export DEB_BUILD_MAINT_OPTIONS=hardening=+all,-pie +export DEB_BUILD_MAINT_OPTIONS=hardening=+all export DH_OPTIONS export PKG_CONFIG_LIBDIR=${CURDIR}
--- End Message ---
--- Begin Message ---Source: jellyfish Source-Version: 2.2.6-2 We believe that the bug you reported is fixed in the latest version of jellyfish, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <[email protected]> (supplier of updated jellyfish package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 25 Aug 2017 14:46:44 +0200 Source: jellyfish Binary: jellyfish libjellyfish-2.0-2 libjellyfish-2.0-dev python3-dna-jellyfish libjellyfish-perl jellyfish-examples Architecture: source amd64 Version: 2.2.6-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Andreas Tille <[email protected]> Description: jellyfish - count k-mers in DNA sequences jellyfish-examples - count k-mers in DNA sequences (examples for testing) libjellyfish-2.0-2 - count k-mers in DNA sequences (dynamic library of jellyfish) libjellyfish-2.0-dev - count k-mers in DNA sequences (development files of jellyfish) libjellyfish-perl - count k-mers in DNA sequences (Perl bindings of jellyfish) python3-dna-jellyfish - count k-mers in DNA sequences (Python bindings of jellyfish) Closes: 865608 872262 Changes: jellyfish (2.2.6-2) unstable; urgency=medium . * Ignore result of "big" test to let autopkgtest pass * debhelper 10 * Parallel builds seem to cause problems - use --no-parallel * d/watch: version=4 * Do not fail on compiler warnings to enable building with gcc-7. (Thanks for the patch to Adrian Bunk <[email protected]>) Closes: #872262 * Enable full hardening Closes: #865608 * Standards-Version: 4.1.0 (no changes needed) Checksums-Sha1: 675fa115ede0f802926f6dc2f433e0a85f5b69bd 2589 jellyfish_2.2.6-2.dsc d0ebb63553f4751e178d069a44a40db220f95d55 11856 jellyfish_2.2.6-2.debian.tar.xz 46ace4193ee5ffa6e22d77406a724d8a69a8ef04 1286626 jellyfish-dbgsym_2.2.6-2_amd64.deb fbf6e53884d05647259d4bcea2c80e7eef244e9b 4704650 jellyfish-examples-dbgsym_2.2.6-2_amd64.deb 196a63750835feeb48b5fdcf0c18c2a8fcb0d66a 489928 jellyfish-examples_2.2.6-2_amd64.deb ef5d2c7d917791f119b051caff1e9f893f172058 10228 jellyfish_2.2.6-2_amd64.buildinfo 732bbaa4f5e6a66cc41c37d9127bea6fbc18e232 358810 jellyfish_2.2.6-2_amd64.deb 22041275ae617a0211969d1b48c928aabe871cad 420512 libjellyfish-2.0-2-dbgsym_2.2.6-2_amd64.deb fe87cf41d4218c4d71de0e5a3db855a44b7b8a8b 62996 libjellyfish-2.0-2_2.2.6-2_amd64.deb 30e1f96c8e90f6f549bc85f6a194223a2af83bb4 129544 libjellyfish-2.0-dev_2.2.6-2_amd64.deb 25eb4dceecd78cb3919054da6fde49217a382a39 288622 libjellyfish-perl-dbgsym_2.2.6-2_amd64.deb 1d52ad49e6a36c02f150683e3cfeccd9e78b2529 55114 libjellyfish-perl_2.2.6-2_amd64.deb 383b165fe4da46959dc4c6616d876fe2eb8757a8 482630 python3-dna-jellyfish-dbgsym_2.2.6-2_amd64.deb 091f890813b6ad73dd72126eea2b86a5222a88f1 51346 python3-dna-jellyfish_2.2.6-2_amd64.deb Checksums-Sha256: 28025e725e285c92a5ccd4f73c840c0ab74cd662d3088d373ca54b875ba5df38 2589 jellyfish_2.2.6-2.dsc b02e1ea369ae209e9d8f62f3bb900d2354eacbf29f7897a0fb873c3a2afa24d7 11856 jellyfish_2.2.6-2.debian.tar.xz 3ed9e412b7934af8de528b7bca6ab7e84dffc9609b343236df2a9996b0a15058 1286626 jellyfish-dbgsym_2.2.6-2_amd64.deb 626696b54c73a08cf01766fc82d41d01898c2df604b7cfad85c1c2f7d4546dd1 4704650 jellyfish-examples-dbgsym_2.2.6-2_amd64.deb dcf721cbb82083d9ce318d50fd2aa3e591f6723a04fe12b0d7cbb54290b9f7d7 489928 jellyfish-examples_2.2.6-2_amd64.deb 9dcf4aed2a973e7af8fdb995bb499c17efa6d12f25c5b72c386e73dbff5670af 10228 jellyfish_2.2.6-2_amd64.buildinfo 1374aeafbb442701a60311cd3d6f9c301760837e83a147439552824026043035 358810 jellyfish_2.2.6-2_amd64.deb 096e93bd283516870603d772e6e8cb9730bae0f888787d24fcb8abe342371a34 420512 libjellyfish-2.0-2-dbgsym_2.2.6-2_amd64.deb a9387f594bd0fb53f56998af1eacbc9cf9837959826d3ce12e6a196a3677b177 62996 libjellyfish-2.0-2_2.2.6-2_amd64.deb 3842983942aaf2c129ec20f1682fb37b82709b0f2c438cabb6d4e194196df980 129544 libjellyfish-2.0-dev_2.2.6-2_amd64.deb 6920155b3e684255ed46d1b0ecef83a013ffd444c9b3b0bc919f7b5543e7defa 288622 libjellyfish-perl-dbgsym_2.2.6-2_amd64.deb f1f6ccaa066804eb1fb0049f3f5d11d829c9cffbe0da8bce96d7ebcd38646f75 55114 libjellyfish-perl_2.2.6-2_amd64.deb 2375c54d3776d18c97f3ff2a5862afb7e5bb71481d693dd4fc4732845c903c3d 482630 python3-dna-jellyfish-dbgsym_2.2.6-2_amd64.deb 43c59b50acd923e19867bfe74c6cbd393a474cd586055f82687cb616084fd624 51346 python3-dna-jellyfish_2.2.6-2_amd64.deb Files: ce0da7021f2ce5d4acc7a08a2c92c6c9 2589 science optional jellyfish_2.2.6-2.dsc d68839d74311c9aec565827d52f17e40 11856 science optional jellyfish_2.2.6-2.debian.tar.xz 6715c9102ce5da936cdab01a7bbd1ed5 1286626 debug extra jellyfish-dbgsym_2.2.6-2_amd64.deb e52e9df2826c31eb1b2bea769f994c5e 4704650 debug extra jellyfish-examples-dbgsym_2.2.6-2_amd64.deb 03797cef0b80b1b21998d97bf3434471 489928 science optional jellyfish-examples_2.2.6-2_amd64.deb b5b14945172e62b228a1dd156c003cba 10228 science optional jellyfish_2.2.6-2_amd64.buildinfo 2de64478aa9661d29d3b2bb4858ebb94 358810 science optional jellyfish_2.2.6-2_amd64.deb a567ae242f9e7f10feafd86054b19b62 420512 debug extra libjellyfish-2.0-2-dbgsym_2.2.6-2_amd64.deb d95c8fb04a099c79a93031e6765cdbf0 62996 libs optional libjellyfish-2.0-2_2.2.6-2_amd64.deb 1f25481765d7d450c205ed1244585b23 129544 libdevel optional libjellyfish-2.0-dev_2.2.6-2_amd64.deb 0f689a56e182754887801b8ba1d8e971 288622 debug extra libjellyfish-perl-dbgsym_2.2.6-2_amd64.deb 54e631a2d321d143070d0801acbedf3f 55114 perl optional libjellyfish-perl_2.2.6-2_amd64.deb 7789a778a6082cae42c7340891196d50 482630 debug extra python3-dna-jellyfish-dbgsym_2.2.6-2_amd64.deb 11d9d1e01317e0bae376f621a535d410 51346 python optional python3-dna-jellyfish_2.2.6-2_amd64.deb -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlmggRURHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEKpQ//QndmL0K2KQSySaidCZFsCOjrHUQFq0u9 h/eJ5swHtdT6dI7lY+5yRbTMB0WblWXuC0/0vMgtb5a84RoAUsJsTh6NeRCxusJb INpzPlhMnmhbRw1IdWS0wSf7A0cGCAyQBQLN+4Ypl1OQhBcmf2cvYKctnAeLC3/9 WupFXNKEYhmvmbDpc+ixE9EcvBz7E+KoxbtZBEnFzUBZuFvReOgO9YNa6/aWexHJ FfYxe8Tciv7s7YrQSScLTbktrQjTBzZLXVf2gKbRkWfBCauE6vAU+pO1dCm6FnIQ KJUZzmU+Zm0zgvahAimU3aOSU63ddnEgsCDa5jdX5J6fi9baci1u9fTuykgPZGSL oSW4N2J8UHaqLz3ZV0nywstXcBCqTm5Bhq6w3e5d/qey/K74kwcD8F+TwxwXNBRr W0XdH0pLouZ5Pu2NJwycsVbo92VUF83Isucoi1dWJ/QRVOTvoHLThf+Fza5EP2y3 0tHEfjwRvkp3H0KI3thqLpM8PNp0YyKsK1PJVdu4lS7Sbi9Bva9vBXgbAEfCSg1j QUk08TV+GiMLTxD18PoMJHvRXHjesLVdizE0FRSfRwvii6MAHd96Xlc7wTvSh8AI pp5paVp5Ewkv883To5L0bs2m1RVh8klvYD8rGsW/YsWAWAQVc4zfptdJsoItS+E9 GhjvzLYf9po= =b+QA -----END PGP SIGNATURE-----
--- End Message ---

