Your message dated Mon, 18 Sep 2017 11:34:48 +0000
with message-id <[email protected]>
and subject line Bug#865191: fixed in probabel 0.4.5-5
has caused the Debian Bug report #865191,
regarding probabel FTBFS on big endian: FAIL: 5
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
865191: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=865191
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: probabel
Version: 0.4.5-3
Severity: important
https://buildd.debian.org/status/package.php?p=probabel&suite=sid
...
make check-TESTS
make[3]: Entering directory '/«PKGBUILDDIR»/checks'
make[4]: Entering directory '/«PKGBUILDDIR»/checks'
PASS: check_dose_input.sh
FAIL: test_qt.sh
PASS: check_probabel_chunk.sh
FAIL: test_bt.sh
FAIL: test_cox.sh
FAIL: test_cox_nocovar.sh
FAIL: test_mms.sh
===========================================
ProbABEL 0.4.5: checks/test-suite.log
===========================================
# TOTAL: 7
# PASS: 2
# SKIP: 0
# XFAIL: 0
# FAIL: 5
# XPASS: 0
# ERROR: 0
.. contents:: :depth: 2
FAIL: test_qt.sh
================
Analysing QT...
base analysis
file contains data of unknown type 1280
diff: linear_base_fv_add.out.txt: No such file or directory
QT check: dose vs. dose_fv FAILED
FAIL test_qt.sh (exit status: 1)
FAIL: test_mms.sh
=================
Analysis using MMScore...
file contains data of unknown type 1280
diff: mmscore_dose_fv_add.out.txt: No such file or directory
mmscore check: dose vs. dose_fv FAILED
FAIL test_mms.sh (exit status: 1)
FAIL: test_bt.sh
================
Analysing BT...
file contains data of unknown type 1280
diff: logist_fv_add.out.txt: No such file or directory
BT check: dose vs. dose_fv FAILED
FAIL test_bt.sh (exit status: 1)
FAIL: test_cox.sh
=================
Analysing Cox model...
Warning for rs3174230: beta may be infinite, setting beta and se to 'NaN'
file contains data of unknown type 1280
diff: coxph_dose_fv_add.out.txt: No such file or directory
pacoxph check: dose vs. dose_fv FAILED
FAIL test_cox.sh (exit status: 1)
FAIL: test_cox_nocovar.sh
=========================
Analysing Cox model without covariates...
Warning for rs3174230: beta may be infinite, setting beta and se to 'NaN'
file contains data of unknown type 1280
diff: coxph_dose_nocovar_fv_add.out.txt: No such file or directory
pacoxph check: dose vs. dose_fv FAILED
FAIL test_cox_nocovar.sh (exit status: 1)
============================================================================
Testsuite summary for ProbABEL 0.4.5
============================================================================
# TOTAL: 7
# PASS: 2
# SKIP: 0
# XFAIL: 0
# FAIL: 5
# XPASS: 0
# ERROR: 0
============================================================================
See checks/test-suite.log
Please report to [email protected]
============================================================================
Makefile:623: recipe for target 'test-suite.log' failed
make[4]: *** [test-suite.log] Error 1
make[4]: Leaving directory '/«PKGBUILDDIR»/checks'
Makefile:729: recipe for target 'check-TESTS' failed
make[3]: *** [check-TESTS] Error 2
make[3]: Leaving directory '/«PKGBUILDDIR»/checks'
Makefile:844: recipe for target 'check-am' failed
make[2]: *** [check-am] Error 2
make[2]: Leaving directory '/«PKGBUILDDIR»/checks'
Makefile:345: recipe for target 'check-recursive' failed
make[1]: *** [check-recursive] Error 1
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_auto_test: make -j2 check VERBOSE=1 returned exit code 2
debian/rules:25: recipe for target 'build-arch' failed
make: *** [build-arch] Error 2
--- End Message ---
--- Begin Message ---
Source: probabel
Source-Version: 0.4.5-5
We believe that the bug you reported is fixed in the latest version of
probabel, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated probabel package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 18 Sep 2017 12:55:39 +0200
Source: probabel
Binary: probabel probabel-examples
Architecture: source amd64 all
Version: 0.4.5-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
probabel - Toolset for Genome-Wide Association Analysis
probabel-examples - Example files for ProbABEL
Closes: 865191
Changes:
probabel (0.4.5-5) unstable; urgency=medium
.
* Ignore errors in test suite for big endian architectures
Closes: #865191
* Standards-Version: 4.1.0
* Drop autoconf dependency (redundant for debhelper 10)
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