Your message dated Fri, 13 Oct 2017 06:03:40 +0000
with message-id <[email protected]>
and subject line Bug#878333: fixed in tree-puzzle 5.2-10
has caused the Debian Bug report #878333,
regarding tree-puzzle: frequent parallel FTBFS
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
878333: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=878333
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: tree-puzzle
Version: 5.2-9
Severity: important
Tags: patch
dh compat 10 defaults to parallel building, which frequently
causes FTBFS like:
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/tree-puzzle.html
...
gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -c ./gamma.c && mv
gamma.o sgamma.o
...
/usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time
-D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat
-Werror=format-security -c ./gamma.c && mv gamma.o pgamma.o
...
/usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time
-D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat
-Werror=format-security -c ./ml2.c && mv ml2.o pml2.o
mv: cannot stat 'gamma.o': No such file or directory
Makefile:716: recipe for target 'sgamma.o' failed
make[3]: *** [sgamma.o] Error 1
That's the same intermediate file twice built and then moved.
The following works around the issue by going back to the
dh compat < 10 default of non-parallel building:
--- debian/rules.old 2017-10-12 22:02:15.000000000 +0000
+++ debian/rules 2017-10-12 22:02:31.000000000 +0000
@@ -8,7 +8,7 @@
ppkg:=tree-ppuzzle
%:
- dh $@
+ dh $@ --no-parallel
override_dh_compress:
dh_compress --exclude=.pdf --exclude .phy --exclude trees --exclude .b
--- End Message ---
--- Begin Message ---
Source: tree-puzzle
Source-Version: 5.2-10
We believe that the bug you reported is fixed in the latest version of
tree-puzzle, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated tree-puzzle package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 13 Oct 2017 07:48:35 +0200
Source: tree-puzzle
Binary: tree-puzzle tree-ppuzzle tree-puzzle-doc
Architecture: source
Version: 5.2-10
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
tree-ppuzzle - Parallelized reconstruction of phylogenetic trees by maximum
like
tree-puzzle - Reconstruction of phylogenetic trees by maximum likelihood
tree-puzzle-doc - Reconstruction of phylogenetic trees by maximum likelihood
(doc)
Closes: 878333
Changes:
tree-puzzle (5.2-10) unstable; urgency=medium
.
* Do not try parallel builds
Closes: #878333
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