Your message dated Wed, 06 Dec 2017 21:05:46 +0000
with message-id <[email protected]>
and subject line Bug#880465: fixed in dssp 3.0.0-2
has caused the Debian Bug report #880465,
regarding dssp: FTBFS with boost1.65+
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
880465: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=880465
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: dssp
Version: 3.0.0-1
Severity: wishlist
Tags: patch
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Dear Maintainer,
as part of transition to boost1.65 dssp will start to FTBFS.
Please see that attached patch.
Regards,
Dimitri.
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Description: Use C++11 tuple, boost1.65 has removed the TR1 library.
Author: Dimitri John Ledkov <[email protected]>
--- a/src/dssp.cpp
+++ b/src/dssp.cpp
@@ -73,7 +73,7 @@
double alpha;
char chirality;
- std::tr1::tie(alpha,chirality) = residue.Alpha();
+ std::tie(alpha,chirality) = residue.Alpha();
uint32 bp[2] = {};
char bridgelabel[2] = { ' ', ' ' };
--- a/src/primitives-3d.cpp
+++ b/src/primitives-3d.cpp
@@ -152,7 +152,7 @@
// --------------------------------------------------------------------
-std::tr1::tuple<double,MPoint> QuaternionToAngleAxis(MQuaternion q)
+std::tuple<double,MPoint> QuaternionToAngleAxis(MQuaternion q)
{
if (q.R_component_1() > 1)
q = Normalize(q);
@@ -168,7 +168,7 @@
MPoint axis(q.R_component_2() / s, q.R_component_3() / s, q.R_component_4() / s);
- return std::tr1::make_tuple(angle, axis);
+ return std::make_tuple(angle, axis);
}
MPoint CenterPoints(std::vector<MPoint>& points)
--- a/src/primitives-3d.h
+++ b/src/primitives-3d.h
@@ -12,8 +12,8 @@
#pragma once
#include <boost/math/quaternion.hpp>
-#include <boost/tr1/tuple.hpp>
+#include <tuple>
#include <vector>
typedef boost::math::quaternion<double> MQuaternion;
@@ -71,7 +71,7 @@
MQuaternion Normalize(MQuaternion q);
-std::tr1::tuple<double,MPoint> QuaternionToAngleAxis(MQuaternion q);
+std::tuple<double,MPoint> QuaternionToAngleAxis(MQuaternion q);
MPoint Centroid(std::vector<MPoint>& points);
MPoint CenterPoints(std::vector<MPoint>& points);
MQuaternion AlignPoints(const std::vector<MPoint>& a,
--- a/src/structure.cpp
+++ b/src/structure.cpp
@@ -554,7 +554,7 @@
return result;
}
-std::tr1::tuple<double,char> MResidue::Alpha() const
+std::tuple<double,char> MResidue::Alpha() const
{
double alhpa = 360;
char chirality = ' ';
@@ -571,7 +571,7 @@
else
chirality = '+';
}
- return std::tr1::make_tuple(alhpa, chirality);
+ return std::make_tuple(alhpa, chirality);
}
double MResidue::Kappa() const
--- a/src/structure.h
+++ b/src/structure.h
@@ -171,7 +171,7 @@
double Phi() const;
double Psi() const;
- std::tr1::tuple<double,char>
+ std::tuple<double,char>
Alpha() const;
double Kappa() const;
double TCO() const;
--- End Message ---
--- Begin Message ---
Source: dssp
Source-Version: 3.0.0-2
We believe that the bug you reported is fixed in the latest version of
dssp, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Gert Wollny <[email protected]> (supplier of updated dssp package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 06 Dec 2017 19:46:08 +0100
Source: dssp
Binary: dssp
Architecture: source
Version: 3.0.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Gert Wollny <[email protected]>
Description:
dssp - protein secondary structure assignment based on 3D structure
Closes: 880465
Changes:
dssp (3.0.0-2) unstable; urgency=medium
.
* Team upload
.
[ Steffen Moeller ]
* debian/upstream/metadata
- Added references to registries
- Upstream name is "DSSP" (all caps), also changed in d/copyright
- yamllint clean
.
[ Gert Wollny ]
* d/p/boost1.65: Add patch for boost 1.65, Closes: #880465
* d/control: Update standards to 4.1.1 (no changes)
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