Your message dated Thu, 07 Dec 2017 17:20:45 +0000
with message-id <[email protected]>
and subject line Bug#780816: fixed in tophat 2.1.1+dfsg1-1
has caused the Debian Bug report #780816,
regarding tophat: contains and uses convience copy of samtools 0.1.18
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
780816: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=780816
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: hedgewars-data
Version: 0.9.21.1-4
Severity: wishlist
File: tophat
Dear Maintainer,
Tophat 2.0.13 started to include a convience copy of samtools 0.1.18, I believe
this is technically a violation of Debian policy. Though I'm not sure how hard
it would be properly fix the issue.
Diane Trout
-- System Information:
Debian Release: 8.0
APT prefers stable-updates
APT policy: (500, 'stable-updates'), (500, 'testing'), (500, 'stable'), (100,
'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 3.16.0-4-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
hedgewars-data depends on no packages.
Versions of packages hedgewars-data recommends:
pn hedgewars <none>
hedgewars-data suggests no packages.
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: tophat
Source-Version: 2.1.1+dfsg1-1
We believe that the bug you reported is fixed in the latest version of
tophat, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Fabian Klötzl <[email protected]> (supplier of updated tophat package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 06 Dec 2017 16:13:31 +0100
Source: tophat
Binary: tophat
Architecture: source
Version: 2.1.1+dfsg1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Fabian Klötzl <[email protected]>
Description:
tophat - fast splice junction mapper for RNA-Seq reads
Closes: 780816
Changes:
tophat (2.1.1+dfsg1-1) unstable; urgency=medium
.
* Team upload
.
* debian/upstream/metadata:
- Added references to registries
- yamllint cleanliness
.
[ Nadiya Sitdykova ]
* add info about debian/tests/test_data
.
[ Fabian Klötzl ]
* remove convenience copy of samtools.
Closes: #780816
* adapt tophat script to recent samtools version
.
[ Andreas Tille ]
* Remove unused license paragraph
* Standards-Version: 4.1.1
* Really remove samtools code copy also from source tarball
* Versioned Depends: samtools (>= 1.5)
* d/watch: enable numbered dfsg-appendices
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