Your message dated Fri, 08 Dec 2017 07:19:26 +0000
with message-id <[email protected]>
and subject line Bug#880347: fixed in bioperl-run 1.7.2-2
has caused the Debian Bug report #880347,
regarding bioperl-run: FTBFS: Test failures
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
880347: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=880347
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: bioperl-run
Version: 1.7.2-1
Severity: serious
Tags: buster sid
User: [email protected]
Usertags: qa-ftbfs-20171030 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part (hopefully):
> ok 9 # skip Required executable for Bio::Tools::Run::tRNAscanSE is not present
> ok 10 # skip Required executable for Bio::Tools::Run::tRNAscanSE is not
> present
> ok 11 # skip Required executable for Bio::Tools::Run::tRNAscanSE is not
> present
> ok 12 # skip Required executable for Bio::Tools::Run::tRNAscanSE is not
> present
> ok
>
> Test Summary Report
> -------------------
> t/Bowtie.t (Wstat: 512 Tests: 61 Failed: 2)
> Failed tests: 43, 45
> Non-zero exit status: 2
> Files=72, Tests=1690, 156 wallclock secs ( 0.24 usr 0.07 sys + 133.72 cusr
> 6.41 csys = 140.44 CPU)
> Result: FAIL
> Failed 1/72 test programs. 2/1690 subtests failed.
> dh_auto_test: perl Build test --verbose 1 returned exit code 255
> debian/rules:32: recipe for target 'override_dh_auto_test' failed
The full build log is available from:
http://aws-logs.debian.net/2017/10/30/bioperl-run_1.7.2-1_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: bioperl-run
Source-Version: 1.7.2-2
We believe that the bug you reported is fixed in the latest version of
bioperl-run, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Alexandre Mestiashvili <[email protected]> (supplier of updated
bioperl-run package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 07 Dec 2017 18:19:04 +0100
Source: bioperl-run
Binary: bioperl-run libbio-perl-run-perl
Architecture: source
Version: 1.7.2-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Alexandre Mestiashvili <[email protected]>
Description:
bioperl-run - BioPerl wrappers: scripts
libbio-perl-run-perl - BioPerl wrappers: modules
Closes: 880347
Changes:
bioperl-run (1.7.2-2) unstable; urgency=medium
.
* Team upload
* Add adjust_bowtie_tests.patch fixing failing tests for Bowtie
Closes: #880347
* Bump Standards-Version to 4.1.2, apply cme fix dpkg
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bioperl-run_1.7.2-2.debian.tar.xz
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bioperl-run_1.7.2-2.debian.tar.xz
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