Your message dated Wed, 20 Dec 2017 15:35:40 +0000
with message-id <[email protected]>
and subject line Bug#866137: fixed in htslib 1.6-3
has caused the Debian Bug report #866137,
regarding htslib autopkgtest is broken in 1.4.1-2
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
866137: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=866137
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: htslib
Version: 1.4.1-2
Severity: important
As seen at <https://ci.debian.net/packages/h/htslib/unstable/amd64/>, the
htslib autopkgtest is broken in 1.4.1-2:
adt-run [07:45:16]: test run-unit-test: [-----------------------
gcc -g -O2 -fdebug-prefix-map=/build/htslib-7uSu1n/htslib-1.4.1=.
-fstack-protector-strong -Wformat -Werror=format-security -I. -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o bgzip.o bgzip.c
gcc -g -O2 -fdebug-prefix-map=/build/htslib-7uSu1n/htslib-1.4.1=.
-fstack-protector-strong -Wformat -Werror=format-security -I. -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c
gcc -g -O2 -fdebug-prefix-map=/build/htslib-7uSu1n/htslib-1.4.1=.
-fstack-protector-strong -Wformat -Werror=format-security -I. -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o knetfile.o knetfile.c
gcc -g -O2 -fdebug-prefix-map=/build/htslib-7uSu1n/htslib-1.4.1=.
-fstack-protector-strong -Wformat -Werror=format-security -I. -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o kstring.o kstring.c
gcc -g -O2 -fdebug-prefix-map=/build/htslib-7uSu1n/htslib-1.4.1=.
-fstack-protector-strong -Wformat -Werror=format-security -I. -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o bcf_sr_sort.o bcf_sr_sort.c
make: *** No rule to make target 'cram/pooled_alloc.h', needed by 'bgzf.o'.
Stop.
make: *** Waiting for unfinished jobs....
adt-run [07:45:18]: test run-unit-test: -----------------------]
adt-run [07:45:18]: test run-unit-test: - - - - - - - - - - results - - - - -
- - - - -
run-unit-test FAIL non-zero exit status 2
Unfortunately Debian does not consider a regressed autopkgtest a blocker for
testing (which would be useful to help us improve the quality of the
release), but Ubuntu does, so FWIW this will block the new htslib from
reaching the next Ubuntu release until fixed.
--
Steve Langasek Give me a lever long enough and a Free OS
Debian Developer to set it on, and I can move the world.
Ubuntu Developer http://www.debian.org/
[email protected] [email protected]
signature.asc
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--- End Message ---
--- Begin Message ---
Source: htslib
Source-Version: 1.6-3
We believe that the bug you reported is fixed in the latest version of
htslib, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Graham Inggs <[email protected]> (supplier of updated htslib package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 20 Dec 2017 14:53:46 +0000
Source: htslib
Binary: libhts2 libhts-dev libhts-private-dev htslib-test tabix
Architecture: source
Version: 1.6-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Graham Inggs <[email protected]>
Description:
htslib-test - Test data for HTSlib
libhts-dev - development files for the HTSlib
libhts-private-dev - private development files for the HTSlib (use with care)
libhts2 - C library for high-throughput sequencing data formats
tabix - generic indexer for TAB-delimited genome position files
Closes: 866137
Changes:
htslib (1.6-3) unstable; urgency=medium
.
* Ship a copy of cram headers in htslib-test instead of
using symlinks (Closes: #866137)
* Fix autopkgtest on i386 with GCC 7, see #881149
Checksums-Sha1:
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199a74e96aee48bf2bb2e13c99f49437192e6704 13364 htslib_1.6-3.debian.tar.xz
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htslib_1.6-3.dsc
02520cdce6fef3ddc21332b95b331ba6b679e3eab6612d682ec217d6ca8d23af 13364
htslib_1.6-3.debian.tar.xz
Files:
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c35b984a796a6dde8fc9db87136d32d8 13364 science optional
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