Your message dated Sun, 14 Jan 2018 16:50:06 +0000 with message-id <[email protected]> and subject line Bug#855810: fixed in hdf5 1.10.1+repack-1~exp1 has caused the Debian Bug report #855810, regarding libhdf5-openmpi-100 doesn't work on arm64 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 855810: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=855810 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: libhdf5-openmpi-100 Version: 1.10.0-patch1+docs-3 Severity: important -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 The attached simple testcase fails on arm64 with: HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) MPI-process 0: #000: ../../../src/H5F.c line 491 in H5Fcreate(): unable to create file major: File accessibilty minor: Unable to open file #001: ../../../src/H5Fint.c line 1100 in H5F_open(): unable to open file: time = Mon Feb 20 10:57:13 2017 , name = 'test.med', tent_flags = 13 major: File accessibilty minor: Unable to open file #002: ../../../src/H5FD.c line 812 in H5FD_open(): open failed major: Virtual File Layer minor: Unable to initialize object #003: ../../../src/H5FDmpio.c line 997 in H5FD_mpio_open(): MPI_File_open failed major: Internal error (too specific to document in detail) minor: Some MPI function failed #004: ../../../src/H5FDmpio.c line 997 in H5FD_mpio_open(): MPI_ERR_OTHER: known error not in list major: Internal error (too specific to document in detail) minor: MPI Error String HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) MPI-process 0: #000: ../../../src/H5F.c line 749 in H5Fclose(): not a file ID major: Invalid arguments to routine minor: Inappropriate type To build it: $ h5pcc.openmpi -o h5_mpitest h5_mpitest.c To run it: $ OMPI_MCA_orte_rsh_agent=/bin/false mpirun.openmpi -np 1 ./h5_mpitest _g. -----BEGIN PGP SIGNATURE----- iQEzBAEBCAAdFiEEoJObzArDE05WtIyR7+hsbH/+z4MFAlisuGoACgkQ7+hsbH/+ z4OlwAf/UP1ZVWtfDEkSiGiGz8ieeQ2gzmogBnd64WPKdKupv3ApyXwh33Of00pw KtRxN6cDqYIxKkd5dbwERHf2+pV82kWLJmnV6gDhi83FjEPm6cxNhaKUAcgnexZz QlNHjfQKXoYj8NAm7rtOyJSKyEVfupGzJNgYWdUat9xEnh1blbRNGKeod8y67HVC lM2CEw+jPNpuFlHSVuNP3eJj4rym+KybYF6dSlQRrDrv9zSs7XREyvfiJ6MaHpzZ Fzq/xlTR0nfQ0xBvec6aTzuOqdkFsYhNJ1hH+p+9oNnrkv9czIogU8avYe5snde0 H2HMZn5P02JhvfB6wAZy4IfHt/SXNg== =a4uN -----END PGP SIGNATURE-----#include <mpi.h> #include <hdf5.h> #define FILE "test.med" int main(int argc, char *argv[]) { hid_t file_id; hid_t fapl; int mpi_size, mpi_rank, ret=0; MPI_Init(&argc, &argv); MPI_Comm_size(MPI_COMM_WORLD, &mpi_size); MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank); /* Create a new file using default properties. */ fapl = H5Pcreate (H5P_FILE_ACCESS); H5Pset_fapl_mpio(fapl, MPI_COMM_WORLD, MPI_INFO_NULL); file_id = H5Fcreate(FILE,H5F_ACC_TRUNC, H5P_DEFAULT,fapl); /* Close the file. */ H5Fclose(file_id); H5Pclose(fapl); MPI_Finalize(); return 0; }
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--- Begin Message ---Source: hdf5 Source-Version: 1.10.1+repack-1~exp1 We believe that the bug you reported is fixed in the latest version of hdf5, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Gilles Filippini <[email protected]> (supplier of updated hdf5 package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Sun, 14 Jan 2018 16:54:08 +0100 Source: hdf5 Binary: libhdf5-101 libhdf5-cpp-101 libhdf5-dev libhdf5-openmpi-101 libhdf5-openmpi-dev libhdf5-mpich-101 libhdf5-mpich-dev libhdf5-mpi-dev libhdf5-doc hdf5-helpers hdf5-tools libhdf5-serial-dev libhdf5-java libhdf5-jni Architecture: source Version: 1.10.1+repack-1~exp1 Distribution: experimental Urgency: medium Maintainer: Debian GIS Project <[email protected]> Changed-By: Gilles Filippini <[email protected]> Description: hdf5-helpers - Hierarchical Data Format 5 (HDF5) - Helper tools hdf5-tools - Hierarchical Data Format 5 (HDF5) - Runtime tools libhdf5-101 - Hierarchical Data Format 5 (HDF5) - runtime files - serial versio libhdf5-cpp-101 - Hierarchical Data Format 5 (HDF5) - C++ libraries libhdf5-dev - Hierarchical Data Format 5 (HDF5) - development files - serial ve libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation libhdf5-java - Hierarchical Data Format 5 (HDF5) - Java Wrapper Library libhdf5-jni - native library used by libhdf5-java libhdf5-mpi-dev - Hierarchical Data Format 5 (HDF5) - development files - default M libhdf5-mpich-101 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2 versio libhdf5-mpich-dev - Hierarchical Data Format 5 (HDF5) - development files - MPICH ver libhdf5-openmpi-101 - Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI versi libhdf5-openmpi-dev - Hierarchical Data Format 5 (HDF5) - development files - OpenMPI v libhdf5-serial-dev - transitional dummy package Closes: 855810 Changes: hdf5 (1.10.1+repack-1~exp1) experimental; urgency=medium . * Fix broken debian/watch due to upstrem web site major change; the uscan download mode is now set to git * Disable dh_auto_test on ppc64el (HDFFV-10309) * This upstream release fixes openmpi flavor on arm64 (closes: #855810) * Priority: replace 'extra' with 'optional' Checksums-Sha1: 40d19321475633ff36a6e6f6f08d30d15e6102d5 2751 hdf5_1.10.1+repack-1~exp1.dsc 619be255bb515ca8267437c276d9dc29ad264933 28043772 hdf5_1.10.1+repack.orig.tar.gz db0b36d271e74be879b922f34876a6fdb6443cae 121968 hdf5_1.10.1+repack-1~exp1.debian.tar.xz 6e09468d7b1d459c1daabcb0417de0750d27668b 8303 hdf5_1.10.1+repack-1~exp1_source.buildinfo Checksums-Sha256: 5d9702d8fa7281cefbc564f31b961bca8db91ccdffa54db55236c8146520382b 2751 hdf5_1.10.1+repack-1~exp1.dsc 208b3df3b4484ef979985bcc5718bf93f04b197bd8cbf125274f760c06d9f75b 28043772 hdf5_1.10.1+repack.orig.tar.gz a1e8a415d74e9fdf34bf3905e3ef893f222d4eaeb4b94e81f4fc249d5876c762 121968 hdf5_1.10.1+repack-1~exp1.debian.tar.xz 062d654bb5b413407dad1c34c65faa7a1491530d5d61021dea6f2139b2814e37 8303 hdf5_1.10.1+repack-1~exp1_source.buildinfo Files: 3c9a9980ea45e03c3dae6e7976d1d31c 2751 science optional hdf5_1.10.1+repack-1~exp1.dsc b4a0062b91a6797154eb4372a8f1c543 28043772 science optional hdf5_1.10.1+repack.orig.tar.gz b6966b82db9e4a59dbbf3854c83514ef 121968 science optional hdf5_1.10.1+repack-1~exp1.debian.tar.xz b52e427eca1a1700b67fc6bf59bacc4c 8303 science optional hdf5_1.10.1+repack-1~exp1_source.buildinfo -----BEGIN PGP SIGNATURE----- iQFEBAEBCgAuFiEEoJObzArDE05WtIyR7+hsbH/+z4MFAlpbg9sQHHBpbmlAZGVi aWFuLm9yZwAKCRDv6Gxsf/7Pg2N2B/9U9Gs9y7nLaEmdxIctn8k9seYmIS4yR10a ow5GdR4vMgUzUVLnIlLwc4n+YA5IghJkAlTBdf1NTCXGLT2Z1/v9YlrCmRePQi1J MYw0cHZvaGHKk4k5UCb5pz2/V7kxESXukpgJJiE4wr7/ztJ1OvSZzMQaWPo+gzzU LI4f6ZxuEHSGqTPiFogtsjw6qz8A+K2SfGpu13jP95Pn73pi2DW1EF+PCCh98v0d W4Obh9fCWVt78JSz4eDR7K9s5uIAUu/zvuqf2JhhVTeL6Xc28ld9Vfyk7lQTkL6q QmzeWZKDcRNlJa0xNiNpxzDvmLUQePaNJhV2kooVXDOeSqOsHrQN =LWQO -----END PGP SIGNATURE-----
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