Your message dated Sun, 11 Feb 2018 23:49:48 +0000
with message-id <[email protected]>
and subject line Bug#890089: fixed in libsbml 5.16.0+dfsg-1
has caused the Debian Bug report #890089,
regarding libsbml: Build-depend on dh-octave instead of octave-pkg-dev
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
890089: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=890089
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: libsbml
Version: 0.9.20+dfsg0-1
Severity: normal
Tags: patch
The octave-pkg-dev has been superseded by dh-octave and will be soon
deprecated. Please, find attached to this bug report a patch for
updating the nlopt source package, accordingly.
Note that in the attached patch I also remove the follwoing lines from
debian/rules:
BIND_OCTAVE :=$(shell which otave-config | grep -q ocatve && echo 'yes')
ifdef BIND_OCTAVE
OCTAVE_PATH := $(shell octave-config --oct-site-dir)
endif
This looks like obsolete code and, besides, there are typos in it
("otave" and "ocatve" instead of "octave").
Rafael Laboissière
-- System Information:
Debian Release: buster/sid
APT prefers testing
APT policy: (650, 'testing'), (600, 'unstable'), (550, 'experimental'), (550, 'stable'), (500, 'oldstable')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 4.9.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.utf8, LC_CTYPE=en_US.utf8 (charmap=UTF-8),
LANGUAGE=en_US.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
diff --git a/debian/control b/debian/control
index 8cfaf895..2afd647d 100644
--- a/debian/control
+++ b/debian/control
@@ -15,7 +15,7 @@ Build-Depends: autoconf,
perl,
libperl-dev,
default-jdk,
- octave-pkg-dev,
+ dh-octave,
r-base-dev,
r-base-core,
graphviz,
@@ -111,7 +111,7 @@ Architecture: any
Section: math
Depends: ${shlibs:Depends},
${misc:Depends},
- octave
+ ${octave:Depends}
Provides: libsbml-octave
Description: System Biology Markup Language library - Octave bindings
LibSBML is a library designed to help you read, write, manipulate,
diff --git a/debian/rules b/debian/rules
index 17a89247..45c93cd4 100755
--- a/debian/rules
+++ b/debian/rules
@@ -12,10 +12,6 @@ debtmp := $(CURDIR)/debian/tmp
SRC_TMP := $(CURDIR)/SRC_TMP
# Test for matlab
CMAKE_OPTS := $(shell sed '/MATLAB/d' debian/cmake_opts)
-BIND_OCTAVE :=$(shell which otave-config | grep -q ocatve && echo 'yes')
-ifdef BIND_OCTAVE
-OCTAVE_PATH := $(shell octave-config --oct-site-dir)
-endif
BIND_MATLAB := $(shell which matlab | grep -q matlab && echo 'yes')
ifdef BIND_MATLAB
CMAKE_OPTS := $(shell cat debian/cmake_opts)
@@ -91,6 +87,7 @@ override_dh_auto_install:
find $(debtmp)/usr/lib -name "*.mex*" -exec strip --strip-unneeded {} + || true
find $(debtmp)/usr/lib -name "*.mex*" -exec strip --remove-section=.comment {} + || true
dpkg-shlibdeps $(debtmp)/usr/lib/*/*/*/*/*.mex -Tdebian/libsbml5-octave.substvars
+ dh_octave_substvar
ifdef BIND_MATLAB
dpkg-shlibdeps $(debtmp)/usr/lib/*.mex* -Tdebian/libsbml5-matlab.substvars
endif
--- End Message ---
--- Begin Message ---
Source: libsbml
Source-Version: 5.16.0+dfsg-1
We believe that the bug you reported is fixed in the latest version of
libsbml, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated libsbml package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 11 Feb 2018 22:54:57 +0100
Source: libsbml
Binary: libsbml5-dev libsbml5 libsbml5-python libsbml5-java libsbml5-perl
libsbml5-octave libsbml5-cil libsbml5-examples libsbml5-doc libsbml5-cil-doc
libsbml5-java-doc libsbml5-perl-doc libsbml5-python-doc
Architecture: source
Version: 5.16.0+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
libsbml5 - System Biology Markup Language library
libsbml5-cil - System Biology Markup Language library - CLI bindings
libsbml5-cil-doc - System Biology Markup Language library -- CLI documentation
libsbml5-dev - System Biology Markup Language library - development files
libsbml5-doc - System Biology Markup Language library -- documentation
libsbml5-examples - System Biology Markup Language library -- example files
libsbml5-java - System Biology Markup Language library - Java bindings
libsbml5-java-doc - System Biology Markup Language library -- Java
documentation
libsbml5-octave - System Biology Markup Language library - Octave bindings
libsbml5-perl - System Biology Markup Language library - Perl bindings
libsbml5-perl-doc - System Biology Markup Language library -- Perl
documentation
libsbml5-python - System Biology Markup Language library - Python bindings
libsbml5-python-doc - System Biology Markup Language library -- Python
documentation
Closes: 890089
Changes:
libsbml (5.16.0+dfsg-1) unstable; urgency=medium
.
* New upstream version
* Build-depend on dh-octave instead of octave-pkg-dev (Thanks for the patch
to Rafael Laboissière <[email protected]>)
Closes: #890089
* Standards-Version: 4.1.3
* debhelper 11
* Adapt docbase files
* Remove unused lintian override
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